BacMap

Definition	Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome.
Accession	NC_007705
Length	4,940,217

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The map label for this gene is cbpA [H]

Identifier: 84622492

GI number: 84622492

Start: 909153

End: 910052

Strand: Direct

Name: cbpA [H]

Synonym: XOO_0835

Alternate gene names: 84622492

Gene position: 909153-910052 (Clockwise)

Preceding gene: 84622491

Following gene: 84622493

Centisome position: 18.4

GC content: 67.44

Gene sequence:

>900_bases
ATGGAATTCAAGGATTACTACGCAACGCTCGGCGTGGAGCCCAGTGCGGGCGATGCGGAGATCAAAACCGCCTACCGGCG
GCTCGCGCGCAAATATCACCCCGACGTCAGCAAGGAAGCCGGCGCCGAAGAAAAGTTCAAGGCGATCAGCGAAGCCTACG
AAGCGCTGCGCGACCCGGCCAAGCGCAAGGCTTACGACCAATTGAAGGCGCAGGGGTTCCGCCCGGGCGACGAGTTCCAG
GCCCCGCCCAATTACGGCGGCGGGCAGGGCTTCGATTTCGAAGAGGTGTTCGGCAACGGCGGTGCCGGTGGCGGCTTCAG
CGATTTCTTCGAGAGCCTGTTTGCCGGCCAGCGCGGCGGCCGTCAGCGCGGTCCCGGCGCCGGCCCCGGCGCAGGTGCCG
GCCCGCAGGCGCGTGGCGACACCCGCGCCAAGCTTGCGGTGCCGCTGGAGGCGGTGCATTCGGGCGACAGCGTGCGCATC
ACCATCAACGGCAAACAGCTGGACGTGCGCGTGCCCAAGGGCGTGCAGCCCGGCCAGGTGATCCGCCTGAGCGGCCAGGG
TAATGGCGGCGGCAACCTGTTGCTGGAGATCGAATACGCGGCGCACCCGCACTTCGAGGTGGACGGGCGCAACATCCTGT
ACACCTTGCAGGTCATGCCCTGGCAGGCCGCGCTGGGCACCACGATCAGCGTGCCCACTCTGGGCGGCTCGGTCGAATTG
AAGGTACCAGCCGACTCCGACGCCGGACGCAAGTTGCGCCTGCGCGGTCGCGGCCTGCCAGGTACCACCCCGGGTGACCA
GATCGTGGAGCTGGAAATCCTGGCCCCGGCCCCGACCGACGATGCTCAGAAGAAGGCCTACCGCAATCTGGCCAAGGCGT
TCGGAGAGACGGTGAGCTGA

Upstream 100 bases:

>100_bases
ACACCTTCCGCGCCGCACGCGCGCTGTCGGCGGGAGTCCTGGCTGCTCGAACTGGCTCGTGGCCTCGGCTGCGGGCCATT
TTTTTCCCAGAGGTGATTAG

Downstream 100 bases:

>100_bases
GCTGATGACTGCACGCTGGATATCTACTAAAACTTGACCACGACAAAATTCGCTGTCCGTAGACCTGTGCGTTGAATCCA
AGCCTGCCCTTTCCGACGTA

Product: curved DNA binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MEFKDYYATLGVEPSAGDAEIKTAYRRLARKYHPDVSKEAGAEEKFKAISEAYEALRDPAKRKAYDQLKAQGFRPGDEFQ
APPNYGGGQGFDFEEVFGNGGAGGGFSDFFESLFAGQRGGRQRGPGAGPGAGAGPQARGDTRAKLAVPLEAVHSGDSVRI
TINGKQLDVRVPKGVQPGQVIRLSGQGNGGGNLLLEIEYAAHPHFEVDGRNILYTLQVMPWQAALGTTISVPTLGGSVEL
KVPADSDAGRKLRLRGRGLPGTTPGDQIVELEILAPAPTDDAQKKAYRNLAKAFGETVS

Sequences:

>Translated_299_residues
MEFKDYYATLGVEPSAGDAEIKTAYRRLARKYHPDVSKEAGAEEKFKAISEAYEALRDPAKRKAYDQLKAQGFRPGDEFQ
APPNYGGGQGFDFEEVFGNGGAGGGFSDFFESLFAGQRGGRQRGPGAGPGAGAGPQARGDTRAKLAVPLEAVHSGDSVRI
TINGKQLDVRVPKGVQPGQVIRLSGQGNGGGNLLLEIEYAAHPHFEVDGRNILYTLQVMPWQAALGTTISVPTLGGSVEL
KVPADSDAGRKLRLRGRGLPGTTPGDQIVELEILAPAPTDDAQKKAYRNLAKAFGETVS
>Mature_299_residues
MEFKDYYATLGVEPSAGDAEIKTAYRRLARKYHPDVSKEAGAEEKFKAISEAYEALRDPAKRKAYDQLKAQGFRPGDEFQ
APPNYGGGQGFDFEEVFGNGGAGGGFSDFFESLFAGQRGGRQRGPGAGPGAGAGPQARGDTRAKLAVPLEAVHSGDSVRI
TINGKQLDVRVPKGVQPGQVIRLSGQGNGGGNLLLEIEYAAHPHFEVDGRNILYTLQVMPWQAALGTTISVPTLGGSVEL
KVPADSDAGRKLRLRGRGLPGTTPGDQIVELEILAPAPTDDAQKKAYRNLAKAFGETVS

Specific function: DNA-binding protein that preferentially recognizes a curved DNA sequence. It is probably a functional analog of DnaJ; displays overlapping activities with DnaJ, but functions under different conditions, probably acting as a molecular chaperone in an adapt

COG id: COG2214

COG function: function code O; DnaJ-class molecular chaperone

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 J domain [H]

Homologues:

Organism=Homo sapiens, GI6631085, Length=332, Percent_Identity=31.6265060240964, Blast_Score=131, Evalue=6e-31,
Organism=Homo sapiens, GI201862587, Length=331, Percent_Identity=30.5135951661631, Blast_Score=124, Evalue=7e-29,
Organism=Homo sapiens, GI56549115, Length=331, Percent_Identity=30.5135951661631, Blast_Score=124, Evalue=8e-29,
Organism=Homo sapiens, GI201862518, Length=331, Percent_Identity=30.5135951661631, Blast_Score=124, Evalue=8e-29,
Organism=Homo sapiens, GI5453690, Length=327, Percent_Identity=31.8042813455657, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI39204547, Length=319, Percent_Identity=28.8401253918495, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI194328760, Length=312, Percent_Identity=26.2820512820513, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI194328758, Length=312, Percent_Identity=26.2820512820513, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI4504511, Length=280, Percent_Identity=28.2142857142857, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI205360840, Length=95, Percent_Identity=47.3684210526316, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI205360838, Length=95, Percent_Identity=47.3684210526316, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI194306642, Length=115, Percent_Identity=43.4782608695652, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI194306640, Length=115, Percent_Identity=43.4782608695652, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI9558755, Length=102, Percent_Identity=41.1764705882353, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI72534740, Length=113, Percent_Identity=41.5929203539823, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI5031741, Length=68, Percent_Identity=52.9411764705882, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI56687498, Length=63, Percent_Identity=53.968253968254, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI23503241, Length=74, Percent_Identity=47.2972972972973, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI4885495, Length=65, Percent_Identity=52.3076923076923, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI17388799, Length=65, Percent_Identity=52.3076923076923, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI88501736, Length=133, Percent_Identity=39.8496240601504, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI27151736, Length=133, Percent_Identity=39.8496240601504, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1787235, Length=316, Percent_Identity=39.5569620253165, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1786197, Length=363, Percent_Identity=32.5068870523416, Blast_Score=143, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI17534355, Length=329, Percent_Identity=31.9148936170213, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17554644, Length=110, Percent_Identity=44.5454545454545, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17553096, Length=63, Percent_Identity=55.5555555555556, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17553098, Length=63, Percent_Identity=55.5555555555556, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17507263, Length=62, Percent_Identity=54.8387096774194, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI115532378, Length=90, Percent_Identity=41.1111111111111, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17538236, Length=97, Percent_Identity=39.1752577319588, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI86563276, Length=127, Percent_Identity=40.1574803149606, Blast_Score=65, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324265, Length=312, Percent_Identity=28.525641025641, Blast_Score=79, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6323870, Length=74, Percent_Identity=50, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6323813, Length=120, Percent_Identity=42.5, Blast_Score=74, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6324321, Length=61, Percent_Identity=59.0163934426229, Blast_Score=72, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322388, Length=111, Percent_Identity=41.4414414414414, Blast_Score=70, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6320888, Length=107, Percent_Identity=38.3177570093458, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI85726398, Length=348, Percent_Identity=27.0114942528736, Blast_Score=112, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24658562, Length=316, Percent_Identity=31.3291139240506, Blast_Score=106, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24658555, Length=316, Percent_Identity=31.3291139240506, Blast_Score=106, Evalue=2e-23,
Organism=Drosophila melanogaster, GI18858081, Length=334, Percent_Identity=29.6407185628743, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI20129487, Length=329, Percent_Identity=25.531914893617, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24584014, Length=329, Percent_Identity=25.531914893617, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI19920464, Length=291, Percent_Identity=25.7731958762887, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI45549272, Length=64, Percent_Identity=57.8125, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI45552813, Length=64, Percent_Identity=57.8125, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24646562, Length=62, Percent_Identity=58.0645161290323, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24646560, Length=62, Percent_Identity=58.0645161290323, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24646558, Length=62, Percent_Identity=58.0645161290323, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24646556, Length=62, Percent_Identity=58.0645161290323, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21357547, Length=62, Percent_Identity=58.0645161290323, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI45552811, Length=64, Percent_Identity=57.8125, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24668492, Length=75, Percent_Identity=44, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24654066, Length=70, Percent_Identity=47.1428571428571, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24654070, Length=70, Percent_Identity=47.1428571428571, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24654068, Length=70, Percent_Identity=47.1428571428571, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24654072, Length=70, Percent_Identity=47.1428571428571, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21358273, Length=63, Percent_Identity=53.968253968254, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI161077138, Length=64, Percent_Identity=50, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002939
- InterPro:   IPR001623
- InterPro:   IPR018253
- InterPro:   IPR008971
- InterPro:   IPR015609
- InterPro:   IPR003095 [H]

Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]

EC number: NA

Molecular weight: Translated: 31741; Mature: 31741

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFKDYYATLGVEPSAGDAEIKTAYRRLARKYHPDVSKEAGAEEKFKAISEAYEALRDPA
CCCHHEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHHCHH
KRKAYDQLKAQGFRPGDEFQAPPNYGGGQGFDFEEVFGNGGAGGGFSDFFESLFAGQRGG
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCC
RQRGPGAGPGAGAGPQARGDTRAKLAVPLEAVHSGDSVRITINGKQLDVRVPKGVQPGQV
CCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHCCCCEEEEEEECCEEEEECCCCCCCCCE
IRLSGQGNGGGNLLLEIEYAAHPHFEVDGRNILYTLQVMPWQAALGTTISVPTLGGSVEL
EEEECCCCCCCEEEEEEEECCCCCEEECCCEEEEEEEECCCHHHHCCEEEECCCCCEEEE
KVPADSDAGRKLRLRGRGLPGTTPGDQIVELEILAPAPTDDAQKKAYRNLAKAFGETVS
EECCCCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEFKDYYATLGVEPSAGDAEIKTAYRRLARKYHPDVSKEAGAEEKFKAISEAYEALRDPA
CCCHHEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHHCHH
KRKAYDQLKAQGFRPGDEFQAPPNYGGGQGFDFEEVFGNGGAGGGFSDFFESLFAGQRGG
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCC
RQRGPGAGPGAGAGPQARGDTRAKLAVPLEAVHSGDSVRITINGKQLDVRVPKGVQPGQV
CCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHCCCCEEEEEEECCEEEEECCCCCCCCCE
IRLSGQGNGGGNLLLEIEYAAHPHFEVDGRNILYTLQVMPWQAALGTTISVPTLGGSVEL
EEEECCCCCCCEEEEEEEECCCCCEEECCCEEEEEEEECCCHHHHCCEEEECCCCCEEEE
KVPADSDAGRKLRLRGRGLPGTTPGDQIVELEILAPAPTDDAQKKAYRNLAKAFGETVS
EECCCCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA