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The map label for this gene is rfbB [C]

Identifier: 84622367

GI number: 84622367

Start: 762788

End: 763864

Strand: Direct

Name: rfbB [C]

Synonym: XOO_0710

Alternate gene names: 84622367

Gene position: 762788-763864 (Clockwise)

Preceding gene: 84622366

Following gene: 84622368

Centisome position: 15.44

GC content: 54.69

Gene sequence:

>1077_bases
ATGGAGAAGGCAGTAATTGTTACCGGTGGAGCCGGCTTCATCGGATGCGCGCTATCTGGCCAGCTCAAAGCATTTGGTCT
GCCAGTAGTTGCGATCGATAATCTTCATCCACAGATTCATGCTGAGTCCAAGCGACCAGAGGTGCTTGACGAGGCGGCGC
ACCTGCACATTGGCGACGTTACCGAAGAAAACACCTGGGGCCAAGTGCTCGAAAATTGGCAGCCGACCATTGTCGTCCAC
TTGGCTGCGGAGACAGGGACCGGTCAGTCATTGACCGAGGCCACTCGTCATGCACACGTAAACGTGGTAGGCACCACCGC
AATGCTAGATGCGTTTTCCGCACGCAAACTAGTTCCTGAACATGTTTTGCTTGCGTCTAGCCGAGCTGTTTACGGTGAAG
GTGCATGGTTGGATGCAAATGGCACAACCTTTTATCCACCGCCACGTTCGCATGAAGTGCTGGCGCGTTCACAGTGGAAT
CCACTATCGCCGTCTGGTAGGGGGGCTGCTTCCCCGTTGTCGCACCGTGCGGATACTGTTTTTCCTAATCCCACTAGCGT
ATATGGAGCAACTAAGCTTGCTCAAGAACATATTCTTGCTGCGTGGTGTGGCGCCATGCAGGTTCCGCTGTCGGTATTCC
GGCTTCAGAATGTCTATGGCCCCGGCCAATCGCCATTCAATTCATACACGGGTATTATCACGCTGTTTCATCGTATGGCG
CGGAAAGCCCAGACGCTAGAAATTTATGAGGATGGCGAAATCGGGCGTGATTTCGTCTTTATCGATGATGTAGTAGTCGC
CTTGATGGCAGGTCTGCGTCAGCCACCCGCTGGCTTGCGTACGCTAGATGTTGGTAGCGGCGTCGTTACTACGATCGCCG
AGGCTGCAAAGTCGATCGCTGCTATGCACGGTGCGCCGGATCCGCAAATCAGCGGGAAATTTCGTGATGGCGATGTGCGC
TGGGCGGTAGCGGATGGTGCTCCTCTCGAACAGTCTCTTGGTGTGCAGGCTCGTATAAATTTTCAGGAAGGCGCCAATCG
TGTCGGCGAGTGGCTGATCGCTCGGGGCTATGCATGA

Upstream 100 bases:

>100_bases
ATTCTGCGCTATTGCAGTTCCGCCGGTCCCATGGCGCAAGCAGATTTGTTGCTGCTACGTGCTTGATGCAAGATAAAATA
CAAATACAGGAAATTCGAAA

Downstream 100 bases:

>100_bases
ATTCGTTTGACGAGAAAACGCAAAAAGAAGAGGTGGGCGTTGTCTCTGTGGCTGCGATGACTGGTGCTCCACGGGATTGG
ATAGACTCAGTGCGGTCATT

Product: putative sugar nucleotide epimerase/dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MEKAVIVTGGAGFIGCALSGQLKAFGLPVVAIDNLHPQIHAESKRPEVLDEAAHLHIGDVTEENTWGQVLENWQPTIVVH
LAAETGTGQSLTEATRHAHVNVVGTTAMLDAFSARKLVPEHVLLASSRAVYGEGAWLDANGTTFYPPPRSHEVLARSQWN
PLSPSGRGAASPLSHRADTVFPNPTSVYGATKLAQEHILAAWCGAMQVPLSVFRLQNVYGPGQSPFNSYTGIITLFHRMA
RKAQTLEIYEDGEIGRDFVFIDDVVVALMAGLRQPPAGLRTLDVGSGVVTTIAEAAKSIAAMHGAPDPQISGKFRDGDVR
WAVADGAPLEQSLGVQARINFQEGANRVGEWLIARGYA

Sequences:

>Translated_358_residues
MEKAVIVTGGAGFIGCALSGQLKAFGLPVVAIDNLHPQIHAESKRPEVLDEAAHLHIGDVTEENTWGQVLENWQPTIVVH
LAAETGTGQSLTEATRHAHVNVVGTTAMLDAFSARKLVPEHVLLASSRAVYGEGAWLDANGTTFYPPPRSHEVLARSQWN
PLSPSGRGAASPLSHRADTVFPNPTSVYGATKLAQEHILAAWCGAMQVPLSVFRLQNVYGPGQSPFNSYTGIITLFHRMA
RKAQTLEIYEDGEIGRDFVFIDDVVVALMAGLRQPPAGLRTLDVGSGVVTTIAEAAKSIAAMHGAPDPQISGKFRDGDVR
WAVADGAPLEQSLGVQARINFQEGANRVGEWLIARGYA
>Mature_358_residues
MEKAVIVTGGAGFIGCALSGQLKAFGLPVVAIDNLHPQIHAESKRPEVLDEAAHLHIGDVTEENTWGQVLENWQPTIVVH
LAAETGTGQSLTEATRHAHVNVVGTTAMLDAFSARKLVPEHVLLASSRAVYGEGAWLDANGTTFYPPPRSHEVLARSQWN
PLSPSGRGAASPLSHRADTVFPNPTSVYGATKLAQEHILAAWCGAMQVPLSVFRLQNVYGPGQSPFNSYTGIITLFHRMA
RKAQTLEIYEDGEIGRDFVFIDDVVVALMAGLRQPPAGLRTLDVGSGVVTTIAEAAKSIAAMHGAPDPQISGKFRDGDVR
WAVADGAPLEQSLGVQARINFQEGANRVGEWLIARGYA

Specific function: DTDP-L-RHAMNOSE BIOSYNTHESIS WITHIN THE O ANTIGEN BIOSYNTHESIS PATHWAY OF LIPOPOLYSACCHARIDE BIOSYNTHESIS. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family. dTDP-glucose dehydratase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788353, Length=360, Percent_Identity=25.5555555555556, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI48994969, Length=375, Percent_Identity=24.2666666666667, Blast_Score=85, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005888
- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: =4.2.1.46 [H]

Molecular weight: Translated: 38275; Mature: 38275

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKAVIVTGGAGFIGCALSGQLKAFGLPVVAIDNLHPQIHAESKRPEVLDEAAHLHIGDV
CCCEEEEECCCCEEEEEECCCCHHHCCCEEEECCCCCCEECCCCCCHHHHHHHCEEECCC
TEENTWGQVLENWQPTIVVHLAAETGTGQSLTEATRHAHVNVVGTTAMLDAFSARKLVPE
CCCCHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHCEEEEEEHHHHHHHHHHHHHCHH
HVLLASSRAVYGEGAWLDANGTTFYPPPRSHEVLARSQWNPLSPSGRGAASPLSHRADTV
HHHHCCCCEEECCCCEECCCCCEECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
FPNPTSVYGATKLAQEHILAAWCGAMQVPLSVFRLQNVYGPGQSPFNSYTGIITLFHRMA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
RKAQTLEIYEDGEIGRDFVFIDDVVVALMAGLRQPPAGLRTLDVGSGVVTTIAEAAKSIA
HHCCEEEEEECCCCCCCEEEHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHH
AMHGAPDPQISGKFRDGDVRWAVADGAPLEQSLGVQARINFQEGANRVGEWLIARGYA
HHCCCCCCCCCCEEECCCEEEEEECCCCHHHHCCCEEEEEHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEKAVIVTGGAGFIGCALSGQLKAFGLPVVAIDNLHPQIHAESKRPEVLDEAAHLHIGDV
CCCEEEEECCCCEEEEEECCCCHHHCCCEEEECCCCCCEECCCCCCHHHHHHHCEEECCC
TEENTWGQVLENWQPTIVVHLAAETGTGQSLTEATRHAHVNVVGTTAMLDAFSARKLVPE
CCCCHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHCEEEEEEHHHHHHHHHHHHHCHH
HVLLASSRAVYGEGAWLDANGTTFYPPPRSHEVLARSQWNPLSPSGRGAASPLSHRADTV
HHHHCCCCEEECCCCEECCCCCEECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
FPNPTSVYGATKLAQEHILAAWCGAMQVPLSVFRLQNVYGPGQSPFNSYTGIITLFHRMA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
RKAQTLEIYEDGEIGRDFVFIDDVVVALMAGLRQPPAGLRTLDVGSGVVTTIAEAAKSIA
HHCCEEEEEECCCCCCCEEEHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHH
AMHGAPDPQISGKFRDGDVRWAVADGAPLEQSLGVQARINFQEGANRVGEWLIARGYA
HHCCCCCCCCCCEEECCCEEEEEECCCCHHHHCCCEEEEEHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]