Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
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Accession | NC_007705 |
Length | 4,940,217 |
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The map label for this gene is 84622087
Identifier: 84622087
GI number: 84622087
Start: 464788
End: 466125
Strand: Direct
Name: 84622087
Synonym: XOO_0430
Alternate gene names: NA
Gene position: 464788-466125 (Clockwise)
Preceding gene: 84622086
Following gene: 84622088
Centisome position: 9.41
GC content: 63.23
Gene sequence:
>1338_bases ATGAGCGTGCGTATCGAGGACCATGCCATGCTGGGCAACTGCCACAGCGCGGCCCTGGTCGATCACCGCGGCACCATCGA TTGGCTGTGTCTGCCACGCTTCGATTCCGACGCCGTCTTCGCCTCGTTGTTGGGCGCTGACCAACATGGGCAATGGGCAT TGTCGCCGGCTGCCGACTTCCGCACCGAGCGCGCCTACGAAGACGACAGTCTGGTGCTGTGCACGCGCATGATCACCGAC AGCGGCACGGTGGAACTGGTCGACTTCATGGTGGCCAGCGAAAACACCGAAGTCCACCAGCACCTGGTGCGTCTCGTGCG CTGCGTACAGGGCAGCGTGCCGATGCACATGCGCCTCACCTTCCGCTTCAACTACGGCCGCACGGTGCCATGGGTCACAC GTATCGTCGATGGCATCCGCGCCATCGCCGGCCCCGATCAACTGGCACTGCGTTCGCCGCAAACGCTGCGCGGCCAAGAC ATGGGCACCGAAGCCGACTTCACCCTGCGCGAAGGCGGAAGCACCTGGTTTCTGCTCAGCCACGGCGCCTCGCATCTGGA GACGCCGCCCCTGATCGATGCCGAACAGGCATTGCAACGCACCACCGCGTTCTGGCATGGCTGGGCGCGCCGCTGCACCG ATGTCGGGCCGTGGACCGAGCAGGTACGCCGCTCTTTGGTCGTTTTGAAGGGACTGAGTTATCTGCCCACCGGCGGCATT GTCGCCGCGCCCACTGCCGCGTTGCCGGAGCATCTGGGCGGCACGCGTAATTGGGATTACCGCTACTGCTGGCTGCGCGA TTCGGTGTTCACCCTGATTGCGTTGCTGCAGGCCGGGTATCGCGATGAAGCCGCTGCGTTTCGCGATTGGGTCCACCGCA CCATTGCCGGTTCGCCGGATCAATTGCAGGCGTTGTACGGCATCGCCGGCGAACGCCGCTTGCAGGAATGGGAAGCGTCC TGGTTGCCCGGTTATGAAGATTCCGGCCCGGTACGCATCGGTAATGGCGCGGTGGATCAGTTTCAGCTCGATGTCTATGG GGAGTTGATCGGCGCCTTTCATTACGCAAGCGAAAAAGGCGTCGGCCCGCCGTCGGACGACGATGGTTCGTCCGCATCGC TGCTGGAAAACATCCTCGATACACTGGAAACGCTGTGGCGCGAACCCGATGAAGGCATCTGGGAAATCCGCGACGAGCGC CGCCACTTCGTCCATTCCAAGGTGATGGCCTGGCTGGCGTTCGACTGCGGCGCGCGTGACGGCATCACCAATGCAGACGC TGAAAAACGCGCGCACTGGGGCCGCATTGCCGACCAAATTCGAGCCGAAGTCCTGTAA
Upstream 100 bases:
>100_bases GGTGCCACCGCTGCTTGGTTTGCCGGCGCAGTCGTGACCTGATCCCGACACGGTGCATGCAAAACTGCGCGTTCTTTCGC CGGAAGGAAGCGCCCAACCC
Downstream 100 bases:
>100_bases AAAGGCGTACATCCGGACGGCCATTTCGTGCAGAGCTATGGCTCGGATCGGCTGGATGCCTCGCTGCTGCTGATCCCCAT CGTGGGTTTTCTGCCGCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: Glycosyl Hydrolase; Glycosyl Hydrolase Family; Glycosy Hydrolase Family Protein; Glycoside Hydrolase Family; Glucoamylase; Glycoside Hydrolase Family Protein; Trehalose-Phosphatase; Glucoamylase-Like Glycosyl Hydrolase; Trehalose Phosphatase; Glycosyl Hydrolase Glucoamylase; Trehalose-Phosphatase/ Glycoside Hydrolase; Glucoamylase Or Related Glycosyl Hydrolase Protein; Glucoamylase Or Related Glycosyl Hydrolase; Six-Hairpin Glycosidase-Like Protein; Hydrolase; Glycosyl Hydrolase Glycosyl Hydrolase Family; Glycosyl Hydrolase Protein
Number of amino acids: Translated: 445; Mature: 444
Protein sequence:
>445_residues MSVRIEDHAMLGNCHSAALVDHRGTIDWLCLPRFDSDAVFASLLGADQHGQWALSPAADFRTERAYEDDSLVLCTRMITD SGTVELVDFMVASENTEVHQHLVRLVRCVQGSVPMHMRLTFRFNYGRTVPWVTRIVDGIRAIAGPDQLALRSPQTLRGQD MGTEADFTLREGGSTWFLLSHGASHLETPPLIDAEQALQRTTAFWHGWARRCTDVGPWTEQVRRSLVVLKGLSYLPTGGI VAAPTAALPEHLGGTRNWDYRYCWLRDSVFTLIALLQAGYRDEAAAFRDWVHRTIAGSPDQLQALYGIAGERRLQEWEAS WLPGYEDSGPVRIGNGAVDQFQLDVYGELIGAFHYASEKGVGPPSDDDGSSASLLENILDTLETLWREPDEGIWEIRDER RHFVHSKVMAWLAFDCGARDGITNADAEKRAHWGRIADQIRAEVL
Sequences:
>Translated_445_residues MSVRIEDHAMLGNCHSAALVDHRGTIDWLCLPRFDSDAVFASLLGADQHGQWALSPAADFRTERAYEDDSLVLCTRMITD SGTVELVDFMVASENTEVHQHLVRLVRCVQGSVPMHMRLTFRFNYGRTVPWVTRIVDGIRAIAGPDQLALRSPQTLRGQD MGTEADFTLREGGSTWFLLSHGASHLETPPLIDAEQALQRTTAFWHGWARRCTDVGPWTEQVRRSLVVLKGLSYLPTGGI VAAPTAALPEHLGGTRNWDYRYCWLRDSVFTLIALLQAGYRDEAAAFRDWVHRTIAGSPDQLQALYGIAGERRLQEWEAS WLPGYEDSGPVRIGNGAVDQFQLDVYGELIGAFHYASEKGVGPPSDDDGSSASLLENILDTLETLWREPDEGIWEIRDER RHFVHSKVMAWLAFDCGARDGITNADAEKRAHWGRIADQIRAEVL >Mature_444_residues SVRIEDHAMLGNCHSAALVDHRGTIDWLCLPRFDSDAVFASLLGADQHGQWALSPAADFRTERAYEDDSLVLCTRMITDS GTVELVDFMVASENTEVHQHLVRLVRCVQGSVPMHMRLTFRFNYGRTVPWVTRIVDGIRAIAGPDQLALRSPQTLRGQDM GTEADFTLREGGSTWFLLSHGASHLETPPLIDAEQALQRTTAFWHGWARRCTDVGPWTEQVRRSLVVLKGLSYLPTGGIV AAPTAALPEHLGGTRNWDYRYCWLRDSVFTLIALLQAGYRDEAAAFRDWVHRTIAGSPDQLQALYGIAGERRLQEWEASW LPGYEDSGPVRIGNGAVDQFQLDVYGELIGAFHYASEKGVGPPSDDDGSSASLLENILDTLETLWREPDEGIWEIRDERR HFVHSKVMAWLAFDCGARDGITNADAEKRAHWGRIADQIRAEVL
Specific function: Unknown
COG id: COG3387
COG function: function code G; Glucoamylase and related glycosyl hydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49779; Mature: 49648
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVRIEDHAMLGNCHSAALVDHRGTIDWLCLPRFDSDAVFASLLGADQHGQWALSPAADF CCEEECCCHHHCCCCHHHEECCCCCEEEEEECCCCCHHHHHHHHCCCCCCCEEECCHHHH RTERAYEDDSLVLCTRMITDSGTVELVDFMVASENTEVHQHLVRLVRCVQGSVPMHMRLT HHHHCCCCCCEEEEEEHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEE FRFNYGRTVPWVTRIVDGIRAIAGPDQLALRSPQTLRGQDMGTEADFTLREGGSTWFLLS EEECCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCEEEECCCCEEEEEE HGASHLETPPLIDAEQALQRTTAFWHGWARRCTDVGPWTEQVRRSLVVLKGLSYLPTGGI CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCE VAAPTAALPEHLGGTRNWDYRYCWLRDSVFTLIALLQAGYRDEAAAFRDWVHRTIAGSPD EECCCHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH QLQALYGIAGERRLQEWEASWLPGYEDSGPVRIGNGAVDQFQLDVYGELIGAFHYASEKG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCC VGPPSDDDGSSASLLENILDTLETLWREPDEGIWEIRDERRHFVHSKVMAWLAFDCGARD CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC GITNADAEKRAHWGRIADQIRAEVL CCCCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SVRIEDHAMLGNCHSAALVDHRGTIDWLCLPRFDSDAVFASLLGADQHGQWALSPAADF CEEECCCHHHCCCCHHHEECCCCCEEEEEECCCCCHHHHHHHHCCCCCCCEEECCHHHH RTERAYEDDSLVLCTRMITDSGTVELVDFMVASENTEVHQHLVRLVRCVQGSVPMHMRLT HHHHCCCCCCEEEEEEHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEE FRFNYGRTVPWVTRIVDGIRAIAGPDQLALRSPQTLRGQDMGTEADFTLREGGSTWFLLS EEECCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCEEEECCCCEEEEEE HGASHLETPPLIDAEQALQRTTAFWHGWARRCTDVGPWTEQVRRSLVVLKGLSYLPTGGI CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCE VAAPTAALPEHLGGTRNWDYRYCWLRDSVFTLIALLQAGYRDEAAAFRDWVHRTIAGSPD EECCCHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH QLQALYGIAGERRLQEWEASWLPGYEDSGPVRIGNGAVDQFQLDVYGELIGAFHYASEKG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCC VGPPSDDDGSSASLLENILDTLETLWREPDEGIWEIRDERRHFVHSKVMAWLAFDCGARD CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC GITNADAEKRAHWGRIADQIRAEVL CCCCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA