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The map label for this gene is 84622068

Identifier: 84622068

GI number: 84622068

Start: 443137

End: 443652

Strand: Direct

Name: 84622068

Synonym: XOO_0411

Alternate gene names: NA

Gene position: 443137-443652 (Clockwise)

Preceding gene: 84622064

Following gene: 84622069

Centisome position: 8.97

GC content: 66.28

Gene sequence:

>516_bases
ATGGATGCTCTGGACGATGACCAACTGCGCGCCATGCTGCCGGCGCTGCGCCGCTTCGCGCGCTCGCTGAGTGGCGACCC
CGCCAGCGCCGACGATCTGGTGCAAGCCACACTCGAGCGTGCGCTGCGGCGGTGGCGCACACGGCATACCGCCGACGCCC
TGCAGCCGTGGTTGTTCGCCATTTTGTACCGGCAGTTTCTGGATGGGCAGCGCCGTGTCGCGCGCTGGCAGCGGGTGGTG
GGTCTGTTCGCCCCACAACAGCCCAGCCAATCCGCATCCGCCGAACAGGTGCACGACGGTCGCGCCATGTTGGCCCGTCT
GGCGTTGTTGCCACCCGAGCAGCGCGCCTTGTTGCTCTTGGTCAGCGTGGAGGGTTTCAGTGATCGCCAGGTGGCAGACA
CCCTCGGCATCCCGATTAGCACGGTGATCTCGCGCCTGTCGCGTGCGCGCGAACGCTTGCGCGCAGTCAACGAAGGTCAC
GTGAACCACGCACCTGCATCGAGGATCCTGAAATGA

Upstream 100 bases:

>100_bases
TTCCCTTGATCGCCAATAATAGTGTGGCACGCGCACGAATGGTGGGAATCATCCGCGCTTCAGTGCGTCCACTGCGTGAT
GCCACCACCAAAACCTGCCA

Downstream 100 bases:

>100_bases
CCATCGCACCGCCCGACGAACACGCGTTGCACGCCTATGTCGATGGCCGCCTTGCCCCGCAGCAACACGCAGCAGTGGCG
GCCTGGTTGCAGGCGCATCC

Product: ECF sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Sigma Factor PrtI; Sigma-; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Subfamily RNA Polymerase Sigma Factor; DNA-Directed RNA Polymerase Sigma Subunit PrtI; RNA Polymerase Sigma-70 Factor ECF Subfamily Protein; RNA Polymerase ECF-Type Sigma Factor

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MDALDDDQLRAMLPALRRFARSLSGDPASADDLVQATLERALRRWRTRHTADALQPWLFAILYRQFLDGQRRVARWQRVV
GLFAPQQPSQSASAEQVHDGRAMLARLALLPPEQRALLLLVSVEGFSDRQVADTLGIPISTVISRLSRARERLRAVNEGH
VNHAPASRILK

Sequences:

>Translated_171_residues
MDALDDDQLRAMLPALRRFARSLSGDPASADDLVQATLERALRRWRTRHTADALQPWLFAILYRQFLDGQRRVARWQRVV
GLFAPQQPSQSASAEQVHDGRAMLARLALLPPEQRALLLLVSVEGFSDRQVADTLGIPISTVISRLSRARERLRAVNEGH
VNHAPASRILK
>Mature_171_residues
MDALDDDQLRAMLPALRRFARSLSGDPASADDLVQATLERALRRWRTRHTADALQPWLFAILYRQFLDGQRRVARWQRVV
GLFAPQQPSQSASAEQVHDGRAMLARLALLPPEQRALLLLVSVEGFSDRQVADTLGIPISTVISRLSRARERLRAVNEGH
VNHAPASRILK

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19231; Mature: 19231

Theoretical pI: Translated: 11.81; Mature: 11.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALDDDQLRAMLPALRRFARSLSGDPASADDLVQATLERALRRWRTRHTADALQPWLFA
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILYRQFLDGQRRVARWQRVVGLFAPQQPSQSASAEQVHDGRAMLARLALLPPEQRALLLL
HHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEE
VSVEGFSDRQVADTLGIPISTVISRLSRARERLRAVNEGHVNHAPASRILK
EECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCC
>Mature Secondary Structure
MDALDDDQLRAMLPALRRFARSLSGDPASADDLVQATLERALRRWRTRHTADALQPWLFA
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILYRQFLDGQRRVARWQRVVGLFAPQQPSQSASAEQVHDGRAMLARLALLPPEQRALLLL
HHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEE
VSVEGFSDRQVADTLGIPISTVISRLSRARERLRAVNEGHVNHAPASRILK
EECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA