Click here to switch to the map view.

The map label for this gene is cdc6

Identifier: 84489444

GI number: 84489444

Start: 743538

End: 744683

Strand: Direct

Name: cdc6

Synonym: Msp_0635

Alternate gene names: 84489444

Gene position: 743538-744683 (Clockwise)

Preceding gene: 84489443

Following gene: 84489446

Centisome position: 42.07

GC content: 26.88

Gene sequence:

>1146_bases
ATGGATTTACAAGACATATTATTACATGATGAAACAATTTTTAAAGATGTAAGAGTATTTAATTCAGATTATTTGCCAGA
AGAATTTAAATTAAGACAATCACAAATGGAAGAAATGGCTTTCTCATTAAGACCTGCATTACATGGTGGAAAACCATCAA
ATAATATACTTTTAGGCCCTCCAGCAACTGGAAAAACAACTGCTATAAAGAAATTATTTGAAATGGCTCAACTGGACTGT
GAAGATGATATAATATGTGTATATGTAAATTGTCAATTACATTCTACAAAATTTGGTATTTTTTCACAAATATATAAGAA
AATATTTGGTCATAATCCTCCTGAAACAGGAGTTCCATTTGCAAGAATATATAATAAAATTATGAATGAATTATATGATA
CTGATAAAGCATTGATTGTTGCATTAGATGATATTAATCATCTATTTCATGGAAATATTATAAGTCAAATATTTTATGAT
ATTCTACGTGCACATGAATCATATGAAGGTGTAAGAACTGGTATATTTGCAGTACTTTCAGATGTGGAATTTAGATTTAT
ATTGGATAAAAATGTAGGATCTATATTCAATGCTGCAGAAATAAATTTTAAACCATACACATATGAAGAAACATATAATA
TATTAAAAGAACGTGTAAACTTAGGATTTTATCCAAATGTTATATCTAATGATTTATTAGAGGAAATTACCACGTATACA
TTTGAAAATGGGGATTTACGATTAGGTATTGATTTACTGCGTATAAGTGGAAATAATGCTGAGGTTAGAGCATCACGTAG
AATTGAGTATGGGGATGTTGAAAAGGCATTTAAAGTATCAAAAAGTGTTAGTTTAAGGTATATATTAAATTCATTATCTG
ATAAAGAAAAAACATTACTTCGTTTTATTACAAGAATGGATAAGAAAAATATAACATCTGGTCAATTATATGAGGAATAT
AATCGTGAAAATAAGATTGGTTATGCAACATACAATAGACAAATTAATAAATTAGAATTTCTAAGATTAATTGATACAAC
ATACACAGGATCTGGAAAGAAAGGAAATTCAAGGTATATTAATTTAAGATTTGATAGTAAACAAATACAAGAAAATCTAC
CACAACAAAAACGAAGATCACTGTAA

Upstream 100 bases:

>100_bases
TGCATAAAATATCTAAATACATGAAAATAGGAATGTTAATTGCATTTGTATCGTTTGCTATGGGAGCATTATAAAATAAA
AAAAAGGAGGACAATAATAG

Downstream 100 bases:

>100_bases
AAATCATGAAAATCAATCTTCATTTTTTTTTAAAAAAGAGAAAAATTTAAGAAATCTATTTTATTATTCACAAGATTTAG
CTGTATTTTTTACATTGTAT

Product: cell division control protein 6

Products: NA

Alternate protein names: CDC6 homolog 2 [H]

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MDLQDILLHDETIFKDVRVFNSDYLPEEFKLRQSQMEEMAFSLRPALHGGKPSNNILLGPPATGKTTAIKKLFEMAQLDC
EDDIICVYVNCQLHSTKFGIFSQIYKKIFGHNPPETGVPFARIYNKIMNELYDTDKALIVALDDINHLFHGNIISQIFYD
ILRAHESYEGVRTGIFAVLSDVEFRFILDKNVGSIFNAAEINFKPYTYEETYNILKERVNLGFYPNVISNDLLEEITTYT
FENGDLRLGIDLLRISGNNAEVRASRRIEYGDVEKAFKVSKSVSLRYILNSLSDKEKTLLRFITRMDKKNITSGQLYEEY
NRENKIGYATYNRQINKLEFLRLIDTTYTGSGKKGNSRYINLRFDSKQIQENLPQQKRRSL

Sequences:

>Translated_381_residues
MDLQDILLHDETIFKDVRVFNSDYLPEEFKLRQSQMEEMAFSLRPALHGGKPSNNILLGPPATGKTTAIKKLFEMAQLDC
EDDIICVYVNCQLHSTKFGIFSQIYKKIFGHNPPETGVPFARIYNKIMNELYDTDKALIVALDDINHLFHGNIISQIFYD
ILRAHESYEGVRTGIFAVLSDVEFRFILDKNVGSIFNAAEINFKPYTYEETYNILKERVNLGFYPNVISNDLLEEITTYT
FENGDLRLGIDLLRISGNNAEVRASRRIEYGDVEKAFKVSKSVSLRYILNSLSDKEKTLLRFITRMDKKNITSGQLYEEY
NRENKIGYATYNRQINKLEFLRLIDTTYTGSGKKGNSRYINLRFDSKQIQENLPQQKRRSL
>Mature_381_residues
MDLQDILLHDETIFKDVRVFNSDYLPEEFKLRQSQMEEMAFSLRPALHGGKPSNNILLGPPATGKTTAIKKLFEMAQLDC
EDDIICVYVNCQLHSTKFGIFSQIYKKIFGHNPPETGVPFARIYNKIMNELYDTDKALIVALDDINHLFHGNIISQIFYD
ILRAHESYEGVRTGIFAVLSDVEFRFILDKNVGSIFNAAEINFKPYTYEETYNILKERVNLGFYPNVISNDLLEEITTYT
FENGDLRLGIDLLRISGNNAEVRASRRIEYGDVEKAFKVSKSVSLRYILNSLSDKEKTLLRFITRMDKKNITSGQLYEEY
NRENKIGYATYNRQINKLEFLRLIDTTYTGSGKKGNSRYINLRFDSKQIQENLPQQKRRSL

Specific function: Might be involved in the initiation of DNA replication [H]

COG id: COG1474

COG function: function code LO; Cdc6-related protein, AAA superfamily ATPase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CDC6/cdc18 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014277 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44141; Mature: 44141

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLQDILLHDETIFKDVRVFNSDYLPEEFKLRQSQMEEMAFSLRPALHGGKPSNNILLGP
CCHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECC
PATGKTTAIKKLFEMAQLDCEDDIICVYVNCQLHSTKFGIFSQIYKKIFGHNPPETGVPF
CCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCH
ARIYNKIMNELYDTDKALIVALDDINHLFHGNIISQIFYDILRAHESYEGVRTGIFAVLS
HHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVEFRFILDKNVGSIFNAAEINFKPYTYEETYNILKERVNLGFYPNVISNDLLEEITTYT
CCEEEEEEECCCCCHHCCCEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHE
FENGDLRLGIDLLRISGNNAEVRASRRIEYGDVEKAFKVSKSVSLRYILNSLSDKEKTLL
ECCCCEEEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH
RFITRMDKKNITSGQLYEEYNRENKIGYATYNRQINKLEFLRLIDTTYTGSGKKGNSRYI
HHHHHHHHCCCCCCHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHEECCCCCCCCCEEE
NLRFDSKQIQENLPQQKRRSL
EEEECHHHHHHCCCHHHHHCC
>Mature Secondary Structure
MDLQDILLHDETIFKDVRVFNSDYLPEEFKLRQSQMEEMAFSLRPALHGGKPSNNILLGP
CCHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECC
PATGKTTAIKKLFEMAQLDCEDDIICVYVNCQLHSTKFGIFSQIYKKIFGHNPPETGVPF
CCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCH
ARIYNKIMNELYDTDKALIVALDDINHLFHGNIISQIFYDILRAHESYEGVRTGIFAVLS
HHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVEFRFILDKNVGSIFNAAEINFKPYTYEETYNILKERVNLGFYPNVISNDLLEEITTYT
CCEEEEEEECCCCCHHCCCEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHE
FENGDLRLGIDLLRISGNNAEVRASRRIEYGDVEKAFKVSKSVSLRYILNSLSDKEKTLL
ECCCCEEEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH
RFITRMDKKNITSGQLYEEYNRENKIGYATYNRQINKLEFLRLIDTTYTGSGKKGNSRYI
HHHHHHHHCCCCCCHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHEECCCCCCCCCEEE
NLRFDSKQIQENLPQQKRRSL
EEEECHHHHHHCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9371463; 11514535 [H]