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The map label for this gene is rmlC [H]

Identifier: 84489349

GI number: 84489349

Start: 634770

End: 635327

Strand: Direct

Name: rmlC [H]

Synonym: Msp_0539

Alternate gene names: 84489349

Gene position: 634770-635327 (Clockwise)

Preceding gene: 84489348

Following gene: 84489350

Centisome position: 35.92

GC content: 31.36

Gene sequence:

>558_bases
ATGGAAAAATTTAAATTTAATGAAACTTCAATTGATGGAGTGTATATTATTGAACCTACAGTTTTTGGAGATAATCGTGG
ATACTTCATGGAAACATATCAGAAGGAAGTATTTAGTAGGGCTGGAATATCTTCAGAATTTGTTCAAGATAATCAGTCTA
AATCTAAAAAGGGTGTTCTTAGAGGATTACATTTTCAACGTACACAGCCTCAGGGAAAACTTGTTCGTGTTATAAAAGGG
GAAGTTTTTGATGTTGCTGTTGATTTAAGAAGTAATTCAAGTACATATGGTAAGTGGGTTGGTGTTATTTTATCTAGTGA
AAATAAGAAACAATTCTACATACCTGAGGGTTTTGCTCATGGATTTTTGGTTTTATCTGATGAAGCAGAGTTTACATATA
AATGTACTGATTATTATAAGGCTGATGATGAAGATGGAATTAAGTGGGATGATGAAACTATTGGTATTAAGTGGCCTTTA
GATGATGTTGATGAGATTATATTATCTGATAAGGATAAGTTATGGAAGTCTTTAGAAGAAACTAATGTTGATTTCTAA

Upstream 100 bases:

>100_bases
GAAAAACTAGGTAAAAATTAGTGTTTTTATATATTAGGGGTTTATTTAAAATAACTTGTTAAATAGAATTATATATTAAT
AATAAATGGAGATAATTATA

Downstream 100 bases:

>100_bases
TTTCTTCTATTTTTTTAGTAAACTTTTTTTTTTTATTTTGTTATTCAATGATTTTTTTTAGGTGATTATATGAAAGTTGT
AGGAATTGTAGGTAGTCCAA

Product: dTDP-4-dehydrorhamnose 3,5-epimerase

Products: NA

Alternate protein names: Thymidine diphospho-4-keto-rhamnose 3,5-epimerase; dTDP-4-keto-6-deoxyglucose 3,5-epimerase; dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase; dTDP-L-rhamnose synthase [H]

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MEKFKFNETSIDGVYIIEPTVFGDNRGYFMETYQKEVFSRAGISSEFVQDNQSKSKKGVLRGLHFQRTQPQGKLVRVIKG
EVFDVAVDLRSNSSTYGKWVGVILSSENKKQFYIPEGFAHGFLVLSDEAEFTYKCTDYYKADDEDGIKWDDETIGIKWPL
DDVDEIILSDKDKLWKSLEETNVDF

Sequences:

>Translated_185_residues
MEKFKFNETSIDGVYIIEPTVFGDNRGYFMETYQKEVFSRAGISSEFVQDNQSKSKKGVLRGLHFQRTQPQGKLVRVIKG
EVFDVAVDLRSNSSTYGKWVGVILSSENKKQFYIPEGFAHGFLVLSDEAEFTYKCTDYYKADDEDGIKWDDETIGIKWPL
DDVDEIILSDKDKLWKSLEETNVDF
>Mature_185_residues
MEKFKFNETSIDGVYIIEPTVFGDNRGYFMETYQKEVFSRAGISSEFVQDNQSKSKKGVLRGLHFQRTQPQGKLVRVIKG
EVFDVAVDLRSNSSTYGKWVGVILSSENKKQFYIPEGFAHGFLVLSDEAEFTYKCTDYYKADDEDGIKWDDETIGIKWPL
DDVDEIILSDKDKLWKSLEETNVDF

Specific function: Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose [H]

COG id: COG1898

COG function: function code M; dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family [H]

Homologues:

Organism=Escherichia coli, GI1788350, Length=175, Percent_Identity=55.4285714285714, Blast_Score=192, Evalue=2e-50,
Organism=Caenorhabditis elegans, GI17550412, Length=166, Percent_Identity=50.6024096385542, Blast_Score=155, Evalue=1e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR000888
- InterPro:   IPR014710
- ProDom:   PD001462 [H]

Pfam domain/function: PF00908 dTDP_sugar_isom [H]

EC number: =5.1.3.13 [H]

Molecular weight: Translated: 21346; Mature: 21346

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKFKFNETSIDGVYIIEPTVFGDNRGYFMETYQKEVFSRAGISSEFVQDNQSKSKKGVL
CCCEECCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHH
RGLHFQRTQPQGKLVRVIKGEVFDVAVDLRSNSSTYGKWVGVILSSENKKQFYIPEGFAH
HCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCEEEEEEEECCCCEEEECCCCCCC
GFLVLSDEAEFTYKCTDYYKADDEDGIKWDDETIGIKWPLDDVDEIILSDKDKLWKSLEE
EEEEEECCCCEEEEECCCCCCCCCCCCEECCCEEEEECCCCHHHHHHHCCHHHHHHHHHH
TNVDF
CCCCC
>Mature Secondary Structure
MEKFKFNETSIDGVYIIEPTVFGDNRGYFMETYQKEVFSRAGISSEFVQDNQSKSKKGVL
CCCEECCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHH
RGLHFQRTQPQGKLVRVIKGEVFDVAVDLRSNSSTYGKWVGVILSSENKKQFYIPEGFAH
HCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCEEEEEEEECCCCEEEECCCCCCC
GFLVLSDEAEFTYKCTDYYKADDEDGIKWDDETIGIKWPLDDVDEIILSDKDKLWKSLEE
EEEEEECCCCEEEEECCCCCCCCCCCCEECCCEEEEECCCCHHHHHHHCCHHHHHHHHHH
TNVDF
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463; 10827167 [H]