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The map label for this gene is rfbH [H]

Identifier: 84489343

GI number: 84489343

Start: 627633

End: 628985

Strand: Direct

Name: rfbH [H]

Synonym: Msp_0533

Alternate gene names: 84489343

Gene position: 627633-628985 (Clockwise)

Preceding gene: 84489342

Following gene: 84489344

Centisome position: 35.51

GC content: 30.23

Gene sequence:

>1353_bases
ATGAATATCAAAGGAGGAATCATTATATTTAAAAATAAGACAGAGAAAGAAGCAAGAGAAGAAATATTACAGTTAGTAAG
GGAATATGCTGATAAATATCATAAACCTGTAGAGTATCATAGGGGAGATAAGATTTCATATGCTTCTAGAGTATATGACT
GTGAAGAAATGGTGAATTTAGTGGATAGCTCCCTTGAATTCTGGTTAACATCAGGAAGATATACTGATTCTTTTGAAAAA
AAATTAGCTAAATATCTTAATATCAAGTATTGTTCATTTGTAAATTCAGGATCATCTGCTAATTTACTAGCTTTTATGGC
ATTAACATCCCCCCTTCTTGAAGATAGACAAATACTTCCTGGAGATGAAGTAATAACAGTAGCAGCAGGATTTCCAACAA
CTGTTGCTCCAATAATACAGTATGGTGCAGTACCAGTATTTATTGATGTTACAATTCCACAGTATAATATAGATGTTAAT
CAACTAGAAGATGCCTCATCTGATAAAACAAAAGCTTTAATAATAGCCCATACTCTTGGTAATCCATTTAATCTAGAATA
CATAACTAAGTTTTGTAAAGAACATGATTTATGGTTAATAGAAGATAATTGTGATGCATTGGGAAGTAAATATGTAATTG
ATAATGAAGAAAAATTCACTGGAACAATAGGTGATATAGGTACAAGTAGTTTTTATCCACCACATCATATGACAACAGGG
GAAGGTGGAGCAGTATATACTAATAATCCTCTACTTAACAGAATCATACGTTCACTACGTGATTGGGGTAGAGATTGTCA
GTGTAGTTCTGGAGAAGATAATTTTTGTGGTAATAGATTTACACAAAAATATGGTAAATTACCTGTAGGCTATGATCATA
AATATGTTTACTCCCATTTTGGATATAATTTAAAGGCAACAGATATGCAAGCAGCAGTAGGTTGTGCACAGATAGATAAA
TTCCCATCTTTTGTTGAAAAAAGAAAGAAAAACTTCAACAGAATAAAAGATGGACTACAGGGTCTTGAAGATAAATTAAT
ACTACCTGAAGCAGAACCAAATAGTGATCCTTCATGGTTTGGTTTTTTAATTACAACAAAAGAAAATAATAGAAATAGAA
TAGTACAGTATTTAGAAGATAATAATATTCAAACAAGAATGTTATTTGCAGGAAATATTATTAAACATCCATGTTTTGAT
CAAATAAGAGATAGTAATAAGTACAGAGTAGTTGGAGACTTAGAAAATACTGATAAAATTATGAATAATACATTTTGGAT
AGGTGTATATCCTGGTATGACTAATGAAAAAATTGATTATATGATTGAAAAAATAAGAGAAGCTGTTGAATAA

Upstream 100 bases:

>100_bases
CCAACATGGAATATTAAAGAAGCTATTGAAAAAACAGTTGAATGGACAAATGCCTATATTAACAATGAAGATATGAAAGA
ATACACCAGTAATCAAATAG

Downstream 100 bases:

>100_bases
TAAATTCATAAATTTAAGTGATTGTCATGAACACTACAGAAGAAAAAATGGTTGAAATACTAAAAATACTAAAAAAAGAC
TATGGTGTAATAGCAGTAAA

Product: pyridoxal-phosphate-dependent aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MNIKGGIIIFKNKTEKEAREEILQLVREYADKYHKPVEYHRGDKISYASRVYDCEEMVNLVDSSLEFWLTSGRYTDSFEK
KLAKYLNIKYCSFVNSGSSANLLAFMALTSPLLEDRQILPGDEVITVAAGFPTTVAPIIQYGAVPVFIDVTIPQYNIDVN
QLEDASSDKTKALIIAHTLGNPFNLEYITKFCKEHDLWLIEDNCDALGSKYVIDNEEKFTGTIGDIGTSSFYPPHHMTTG
EGGAVYTNNPLLNRIIRSLRDWGRDCQCSSGEDNFCGNRFTQKYGKLPVGYDHKYVYSHFGYNLKATDMQAAVGCAQIDK
FPSFVEKRKKNFNRIKDGLQGLEDKLILPEAEPNSDPSWFGFLITTKENNRNRIVQYLEDNNIQTRMLFAGNIIKHPCFD
QIRDSNKYRVVGDLENTDKIMNNTFWIGVYPGMTNEKIDYMIEKIREAVE

Sequences:

>Translated_450_residues
MNIKGGIIIFKNKTEKEAREEILQLVREYADKYHKPVEYHRGDKISYASRVYDCEEMVNLVDSSLEFWLTSGRYTDSFEK
KLAKYLNIKYCSFVNSGSSANLLAFMALTSPLLEDRQILPGDEVITVAAGFPTTVAPIIQYGAVPVFIDVTIPQYNIDVN
QLEDASSDKTKALIIAHTLGNPFNLEYITKFCKEHDLWLIEDNCDALGSKYVIDNEEKFTGTIGDIGTSSFYPPHHMTTG
EGGAVYTNNPLLNRIIRSLRDWGRDCQCSSGEDNFCGNRFTQKYGKLPVGYDHKYVYSHFGYNLKATDMQAAVGCAQIDK
FPSFVEKRKKNFNRIKDGLQGLEDKLILPEAEPNSDPSWFGFLITTKENNRNRIVQYLEDNNIQTRMLFAGNIIKHPCFD
QIRDSNKYRVVGDLENTDKIMNNTFWIGVYPGMTNEKIDYMIEKIREAVE
>Mature_450_residues
MNIKGGIIIFKNKTEKEAREEILQLVREYADKYHKPVEYHRGDKISYASRVYDCEEMVNLVDSSLEFWLTSGRYTDSFEK
KLAKYLNIKYCSFVNSGSSANLLAFMALTSPLLEDRQILPGDEVITVAAGFPTTVAPIIQYGAVPVFIDVTIPQYNIDVN
QLEDASSDKTKALIIAHTLGNPFNLEYITKFCKEHDLWLIEDNCDALGSKYVIDNEEKFTGTIGDIGTSSFYPPHHMTTG
EGGAVYTNNPLLNRIIRSLRDWGRDCQCSSGEDNFCGNRFTQKYGKLPVGYDHKYVYSHFGYNLKATDMQAAVGCAQIDK
FPSFVEKRKKNFNRIKDGLQGLEDKLILPEAEPNSDPSWFGFLITTKENNRNRIVQYLEDNNIQTRMLFAGNIIKHPCFD
QIRDSNKYRVVGDLENTDKIMNNTFWIGVYPGMTNEKIDYMIEKIREAVE

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=409, Percent_Identity=23.7163814180929, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI2367285, Length=315, Percent_Identity=26.3492063492064, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 51381; Mature: 51381

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKGGIIIFKNKTEKEAREEILQLVREYADKYHKPVEYHRGDKISYASRVYDCEEMVNL
CCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHH
VDSSLEFWLTSGRYTDSFEKKLAKYLNIKYCSFVNSGSSANLLAFMALTSPLLEDRQILP
HHCCHHEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC
GDEVITVAAGFPTTVAPIIQYGAVPVFIDVTIPQYNIDVNQLEDASSDKTKALIIAHTLG
CCCEEEEECCCCHHHHHHHHHCCEEEEEEEECCCCCCCHHHHCCCCCCCCEEEEEEEECC
NPFNLEYITKFCKEHDLWLIEDNCDALGSKYVIDNEEKFTGTIGDIGTSSFYPPHHMTTG
CCCCHHHHHHHHCCCCCEEEECCCCCCCCEEEECCCCCEEECCCCCCCCCCCCCCCCCCC
EGGAVYTNNPLLNRIIRSLRDWGRDCQCSSGEDNFCGNRFTQKYGKLPVGYDHKYVYSHF
CCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHC
GYNLKATDMQAAVGCAQIDKFPSFVEKRKKNFNRIKDGLQGLEDKLILPEAEPNSDPSWF
CCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCEE
GFLITTKENNRNRIVQYLEDNNIQTRMLFAGNIIKHPCFDQIRDSNKYRVVGDLENTDKI
EEEEEECCCCCCHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHCCCCEEEEECCCHHHHH
MNNTFWIGVYPGMTNEKIDYMIEKIREAVE
HCCEEEEEEECCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNIKGGIIIFKNKTEKEAREEILQLVREYADKYHKPVEYHRGDKISYASRVYDCEEMVNL
CCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHH
VDSSLEFWLTSGRYTDSFEKKLAKYLNIKYCSFVNSGSSANLLAFMALTSPLLEDRQILP
HHCCHHEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC
GDEVITVAAGFPTTVAPIIQYGAVPVFIDVTIPQYNIDVNQLEDASSDKTKALIIAHTLG
CCCEEEEECCCCHHHHHHHHHCCEEEEEEEECCCCCCCHHHHCCCCCCCCEEEEEEEECC
NPFNLEYITKFCKEHDLWLIEDNCDALGSKYVIDNEEKFTGTIGDIGTSSFYPPHHMTTG
CCCCHHHHHHHHCCCCCEEEECCCCCCCCEEEECCCCCEEECCCCCCCCCCCCCCCCCCC
EGGAVYTNNPLLNRIIRSLRDWGRDCQCSSGEDNFCGNRFTQKYGKLPVGYDHKYVYSHF
CCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHC
GYNLKATDMQAAVGCAQIDKFPSFVEKRKKNFNRIKDGLQGLEDKLILPEAEPNSDPSWF
CCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCEE
GFLITTKENNRNRIVQYLEDNNIQTRMLFAGNIIKHPCFDQIRDSNKYRVVGDLENTDKI
EEEEEECCCCCCHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHCCCCEEEEECCCHHHHH
MNNTFWIGVYPGMTNEKIDYMIEKIREAVE
HCCEEEEEEECCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]