Definition | Methanosphaera stadtmanae DSM 3091 chromosome, complete genome. |
---|---|
Accession | NC_007681 |
Length | 1,767,403 |
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The map label for this gene is mod [H]
Identifier: 84489283
GI number: 84489283
Start: 553904
End: 554671
Strand: Direct
Name: mod [H]
Synonym: Msp_0472
Alternate gene names: 84489283
Gene position: 553904-554671 (Clockwise)
Preceding gene: 84489282
Following gene: 84489284
Centisome position: 31.34
GC content: 26.17
Gene sequence:
>768_bases ATGGTTACGGATACTAATTATTCACTAAATCCAAATTATCCAAAATCTAGAAAAATTTTTTATCCTGGAGTAAAAATGTC AACTTCAAAACCAGAACAAAATATAATATTAGATTTCTTTTCAGGTTCTGCAACAACAGCAGAAGCTGTGATGGATTTAA ATCTTCAAAATAATTTAAATAATAAATTTATCATGATTCAATATCGTGAAAAAACAGATGAAAAATCTGAAGCCTACAAA CAAGGTTATAATACAATTTGTGAAATAGGTGAAGAACGTATACGTCGAGCTGGTGATAAATTGTTAGATGAACATCCAGA TAGTAATATAGATATTGGTTTTAAAGTTCTGAAATTAGACACCTCAAATTTTAAAGAATGGGATCCTAGTGATAGTCCTT TAGAAGAATATCTTGATGATAGTGTGATTAATGTAAAAGAAGATAGAACTGATTTAGATTTTATTTATGAAATCATGATA AAATATGGAATTGAATTAACATCACCTATAGAAGAAATTAAAAAATCTAATTATACATTCTATTCTGTTGGTTATGGAGC ATTAATAGTTTGTTTAGATGATAAAGTAAATGAAGACGTAACTGAGGAAATAATTGAAATAATAAATGAAATAGAAATAG TCGATGAAAATAAGAAACACAAGAATAGGGTTGTATTTAAAGATATTAGTTTCTTAGATGATTCTGTAAAAACTAACATT ATCCAAGTACTAGAAAACAACAACATTGAAGACTTTATTACTTATTAA
Upstream 100 bases:
>100_bases AAATTTAAAAATACAAAAGAAAAATAAATATTCAAAAATCAAGACCCGACAACTGGAAAGCCACCCTAAACCAAAAGAAT TAATTAAACATTTAATTAAC
Downstream 100 bases:
>100_bases GTTGGTGATTGTTCATGGAATTAAATTTTGAATCAAATTTGGAATACCAACAAGATGCTATTGGTTCTATTGTAGATTTG TTTAATGGCCAAGCTTCTGA
Product: hypothetical protein
Products: NA
Alternate protein names: M.EcoP15I; EcoP15I methyltransferase [H]
Number of amino acids: Translated: 255; Mature: 255
Protein sequence:
>255_residues MVTDTNYSLNPNYPKSRKIFYPGVKMSTSKPEQNIILDFFSGSATTAEAVMDLNLQNNLNNKFIMIQYREKTDEKSEAYK QGYNTICEIGEERIRRAGDKLLDEHPDSNIDIGFKVLKLDTSNFKEWDPSDSPLEEYLDDSVINVKEDRTDLDFIYEIMI KYGIELTSPIEEIKKSNYTFYSVGYGALIVCLDDKVNEDVTEEIIEIINEIEIVDENKKHKNRVVFKDISFLDDSVKTNI IQVLENNNIEDFITY
Sequences:
>Translated_255_residues MVTDTNYSLNPNYPKSRKIFYPGVKMSTSKPEQNIILDFFSGSATTAEAVMDLNLQNNLNNKFIMIQYREKTDEKSEAYK QGYNTICEIGEERIRRAGDKLLDEHPDSNIDIGFKVLKLDTSNFKEWDPSDSPLEEYLDDSVINVKEDRTDLDFIYEIMI KYGIELTSPIEEIKKSNYTFYSVGYGALIVCLDDKVNEDVTEEIIEIINEIEIVDENKKHKNRVVFKDISFLDDSVKTNI IQVLENNNIEDFITY >Mature_255_residues MVTDTNYSLNPNYPKSRKIFYPGVKMSTSKPEQNIILDFFSGSATTAEAVMDLNLQNNLNNKFIMIQYREKTDEKSEAYK QGYNTICEIGEERIRRAGDKLLDEHPDSNIDIGFKVLKLDTSNFKEWDPSDSPLEEYLDDSVINVKEDRTDLDFIYEIMI KYGIELTSPIEEIKKSNYTFYSVGYGALIVCLDDKVNEDVTEEIIEIINEIEIVDENKKHKNRVVFKDISFLDDSVKTNI IQVLENNNIEDFITY
Specific function: Binds the system-specific DNA recognition site 5'- CAGCAC-3'. Necessary for both restriction and methylation (of one of the two A's) [H]
COG id: COG2189
COG function: function code L; Adenine specific DNA methylase Mod
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002295 - InterPro: IPR002941 - InterPro: IPR002052 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 29569; Mature: 29569
Theoretical pI: Translated: 4.23; Mature: 4.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVTDTNYSLNPNYPKSRKIFYPGVKMSTSKPEQNIILDFFSGSATTAEAVMDLNLQNNLN CCCCCCCCCCCCCCCCCEEEECCEECCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCC NKFIMIQYREKTDEKSEAYKQGYNTICEIGEERIRRAGDKLLDEHPDSNIDIGFKVLKLD CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE TSNFKEWDPSDSPLEEYLDDSVINVKEDRTDLDFIYEIMIKYGIELTSPIEEIKKSNYTF CCCCCCCCCCCCHHHHHCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCEE YSVGYGALIVCLDDKVNEDVTEEIIEIINEIEIVDENKKHKNRVVFKDISFLDDSVKTNI EEECCCEEEEEECCCCCHHHHHHHHHHHHHHEECCCCCCCCCEEEEEHHHHHHHHHHHHH IQVLENNNIEDFITY HHHHHCCCHHHHCCC >Mature Secondary Structure MVTDTNYSLNPNYPKSRKIFYPGVKMSTSKPEQNIILDFFSGSATTAEAVMDLNLQNNLN CCCCCCCCCCCCCCCCCEEEECCEECCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCC NKFIMIQYREKTDEKSEAYKQGYNTICEIGEERIRRAGDKLLDEHPDSNIDIGFKVLKLD CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE TSNFKEWDPSDSPLEEYLDDSVINVKEDRTDLDFIYEIMIKYGIELTSPIEEIKKSNYTF CCCCCCCCCCCCHHHHHCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCEE YSVGYGALIVCLDDKVNEDVTEEIIEIINEIEIVDENKKHKNRVVFKDISFLDDSVKTNI EEECCCEEEEEECCCCCHHHHHHHHHHHHHHEECCCCCCCCCEEEEEHHHHHHHHHHHHH IQVLENNNIEDFITY HHHHHCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2837577 [H]