Click here to switch to the map view.

The map label for this gene is 84489278

Identifier: 84489278

GI number: 84489278

Start: 547195

End: 548169

Strand: Direct

Name: 84489278

Synonym: Msp_0467

Alternate gene names: NA

Gene position: 547195-548169 (Clockwise)

Preceding gene: 84489273

Following gene: 84489279

Centisome position: 30.96

GC content: 27.28

Gene sequence:

>975_bases
ATGAAACCTCCAAAATCGTTAAACAATAAAAATCAAGATACTGTTTTCAACGAATTAAATGAATACTTAACATTTAATTC
TAGATTATCTGTTATAAGTGGTTCTTTCAGTATTTATGCATATAATAAATTAAAAAATAAGTTAAATGATATTGATAATA
TGCGTTTTATATTCACAGAACCATCTTTTATTAAAAACAAAGATAACACAGAAACTCGTGAATATGAAATAAAAGATATT
TCTAAAGATATTTTTGGAAACAAATATGAATTAAGACTAAAAAATGAAATGACACAAGGTGCAATCACACGTGAATGTGC
CGAATGGATAAAAGATAAAGTTGAAGTGAAAAGCTATATCAATTCTAATCCAGCGTATCCTAGAATGATACACTTAGGAA
ATAAAGAAGATGAAAAATGTATTAGTATTAATGGAACTGTTGATTTTACTAGTGATGGTCTAGGAATTACACCATCCAAT
AGACAAGACAATAATACATGTATGTATGGTAAAACATGGACAGACAGCCAATTAATGATATTTGAACAACAATGGAACGA
TACCCAATTAGTAGAAGATGTTAAAGATGAATTTCTTAAGCATTTACAGACCATGTATGCAGAAAATTCACCAGAATTCA
TATACTATTATAGCATGTACCATTTATTCAATGATTACTTACATAACACAGATAAAAATACATTACCTAAGACAGAAACA
GGGTTTAAAGAAACAAAAATATGGAATACTTTATATAAGTTTCAACAAGATGCAGTAATGGGTGCAATTGATAAAATTGA
AAAATATAATGGTTGTATAATTGCAGATAGTGTAGGATTAGGAAAAACATATACTGCCTTAGCCATTATGAAATATTATC
AACTAAGAAACGATCGTATACTAGTGCTAGTTCCTAAAAAATTAAGAGACAACTGGACAGTATACATAAAAAATGATAAC
GTAATATTTTTTTAA

Upstream 100 bases:

>100_bases
TAAACGATAGTTACAATAGTGTAATTTCGAAACTCTTAGACGAATATGATAAAAATAAAATATTACGGAAAAAAGGACAG
TTATAATCTATGGTGATTAT

Downstream 100 bases:

>100_bases
TGAAGACCGATTTAATTATGATGTGTTAAATCATACAGACCTTAGCAGATACAAAGGAAAAAGTGGAGATATTGACCTAA
AAACATTAAATTGGGGTAAC

Product: hypothetical protein

Products: NA

Alternate protein names: Helicase Domain-Containing Protein; Helicase; Helicase-Like; DNA-Dependent ATPase SNF2 Family Protein; Helicase Domain/SNF2 Family Domain Protein; Helicase/SNF2 Domain-Containing Protein; ATP-Dependent Helicase Hepa; Helicase Conserved C-Terminal Domain Protein; ATP-Dependent Helicase HEPA; Helicase-Like Protein; SNF2-RelatedHelicase C-Terminal:Type III Restriction; DEAD/DEAH Box Helicase-Like Protein; DNA/RNA-Dependent Helicase SNF II Family Domain Protein; Helicase DEAD/DEAH Box; DEAD/DEAH Box Helicase-Like; Type III Restriction Res Subunit; DNA/RNA Helicases SNF2 Family; Helicase C-Terminal Domain Protein; SNF2 Family; Snf2/Rad54 Family Helicase; Helicase C-Terminal Domain; Snf2 Family RNA Helicase

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MKPPKSLNNKNQDTVFNELNEYLTFNSRLSVISGSFSIYAYNKLKNKLNDIDNMRFIFTEPSFIKNKDNTETREYEIKDI
SKDIFGNKYELRLKNEMTQGAITRECAEWIKDKVEVKSYINSNPAYPRMIHLGNKEDEKCISINGTVDFTSDGLGITPSN
RQDNNTCMYGKTWTDSQLMIFEQQWNDTQLVEDVKDEFLKHLQTMYAENSPEFIYYYSMYHLFNDYLHNTDKNTLPKTET
GFKETKIWNTLYKFQQDAVMGAIDKIEKYNGCIIADSVGLGKTYTALAIMKYYQLRNDRILVLVPKKLRDNWTVYIKNDN
VIFF

Sequences:

>Translated_324_residues
MKPPKSLNNKNQDTVFNELNEYLTFNSRLSVISGSFSIYAYNKLKNKLNDIDNMRFIFTEPSFIKNKDNTETREYEIKDI
SKDIFGNKYELRLKNEMTQGAITRECAEWIKDKVEVKSYINSNPAYPRMIHLGNKEDEKCISINGTVDFTSDGLGITPSN
RQDNNTCMYGKTWTDSQLMIFEQQWNDTQLVEDVKDEFLKHLQTMYAENSPEFIYYYSMYHLFNDYLHNTDKNTLPKTET
GFKETKIWNTLYKFQQDAVMGAIDKIEKYNGCIIADSVGLGKTYTALAIMKYYQLRNDRILVLVPKKLRDNWTVYIKNDN
VIFF
>Mature_324_residues
MKPPKSLNNKNQDTVFNELNEYLTFNSRLSVISGSFSIYAYNKLKNKLNDIDNMRFIFTEPSFIKNKDNTETREYEIKDI
SKDIFGNKYELRLKNEMTQGAITRECAEWIKDKVEVKSYINSNPAYPRMIHLGNKEDEKCISINGTVDFTSDGLGITPSN
RQDNNTCMYGKTWTDSQLMIFEQQWNDTQLVEDVKDEFLKHLQTMYAENSPEFIYYYSMYHLFNDYLHNTDKNTLPKTET
GFKETKIWNTLYKFQQDAVMGAIDKIEKYNGCIIADSVGLGKTYTALAIMKYYQLRNDRILVLVPKKLRDNWTVYIKNDN
VIFF

Specific function: Unknown

COG id: COG0553

COG function: function code KL; Superfamily II DNA/RNA helicases, SNF2 family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38104; Mature: 38104

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPPKSLNNKNQDTVFNELNEYLTFNSRLSVISGSFSIYAYNKLKNKLNDIDNMRFIFTE
CCCCCCCCCCCCHHHHHHHHHHEEECCEEEEEECCEEEEEHHHHHHHHCCCCCEEEEEEC
PSFIKNKDNTETREYEIKDISKDIFGNKYELRLKNEMTQGAITRECAEWIKDKVEVKSYI
CHHHCCCCCCCCCEEEHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
NSNPAYPRMIHLGNKEDEKCISINGTVDFTSDGLGITPSNRQDNNTCMYGKTWTDSQLMI
CCCCCCCEEEECCCCCCCCEEEECCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEE
FEQQWNDTQLVEDVKDEFLKHLQTMYAENSPEFIYYYSMYHLFNDYLHNTDKNTLPKTET
EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCCC
GFKETKIWNTLYKFQQDAVMGAIDKIEKYNGCIIADSVGLGKTYTALAIMKYYQLRNDRI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCEE
LVLVPKKLRDNWTVYIKNDNVIFF
EEEECCCCCCCEEEEEECCCEEEC
>Mature Secondary Structure
MKPPKSLNNKNQDTVFNELNEYLTFNSRLSVISGSFSIYAYNKLKNKLNDIDNMRFIFTE
CCCCCCCCCCCCHHHHHHHHHHEEECCEEEEEECCEEEEEHHHHHHHHCCCCCEEEEEEC
PSFIKNKDNTETREYEIKDISKDIFGNKYELRLKNEMTQGAITRECAEWIKDKVEVKSYI
CHHHCCCCCCCCCEEEHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
NSNPAYPRMIHLGNKEDEKCISINGTVDFTSDGLGITPSNRQDNNTCMYGKTWTDSQLMI
CCCCCCCEEEECCCCCCCCEEEECCEEEECCCCCCCCCCCCCCCCEEEECCCCCCCEEEE
FEQQWNDTQLVEDVKDEFLKHLQTMYAENSPEFIYYYSMYHLFNDYLHNTDKNTLPKTET
EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCCC
GFKETKIWNTLYKFQQDAVMGAIDKIEKYNGCIIADSVGLGKTYTALAIMKYYQLRNDRI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCEE
LVLVPKKLRDNWTVYIKNDNVIFF
EEEECCCCCCCEEEEEECCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA