Definition | Methanosphaera stadtmanae DSM 3091 chromosome, complete genome. |
---|---|
Accession | NC_007681 |
Length | 1,767,403 |
Click here to switch to the map view.
The map label for this gene is 84489248
Identifier: 84489248
GI number: 84489248
Start: 510582
End: 511640
Strand: Direct
Name: 84489248
Synonym: Msp_0437
Alternate gene names: NA
Gene position: 510582-511640 (Clockwise)
Preceding gene: 84489244
Following gene: 84489251
Centisome position: 28.89
GC content: 27.38
Gene sequence:
>1059_bases ATGTCTGGATTTTATTCTGAAAAAATTTTTACCAATGAATTATTTGATGTATTTAAACAGGATGCTGCAATTGTTGTTTA TCTAAAAAAGGAAAATAACTTGATTATTTCATCATGGATTAATGGAGGTTATCAAGAAAATTTGAAATATATTGTTAATC AAACATTAGATGGTACAGATTATGATGAAATGGTTTCAATGGATTATTCCACATTTCAAACAAGATGTATGGAAAAAATT AATTTAAATCCAAATGAATCAGCAGGTATGGCAACATCTGCATGTATGGATAATTATGCAATAAGTGTATATGAATATAA GGATTTAAAAGTAACTTCTATTGTAACAGCAGGTGCAGATAATAATGGAATTAAGGCGGGAGATCCTGCATCATTTTATG AACATAATAATGAATATAATCTCGATGTTGGAACAATAAATATTATAACAATAATTGATGCAAATCTAGAACCAGGAACA TTAATAACAGCATCAATAACAGCTACTGAAGCAAAAACTAGTGTACTTCAAGATTTAAAATTAGAAAGTCAGTTTTCAAC ACATATAGCAACAGGTACTGGTACTGATGGAATTTGTGTTATTTCCAATAAATCTAGTGAGAATCATATTGAAAATGCAG GTAAACACTCAAAGCTAGGTGAAATTATTGCAAAGTCAGTTCAAGAAGCAACAAGAAAAGCTCTCTATCTACAAACAGAA ATGTGTATATCTTACCAGAAATCAGTACTTAACAGATTAAGTAGATTTAACATAGATTTTGATACATTCTACAATAAAAC AGAAGGTATTACAAAGACAGATTATGCTATGAAATTCAATAATTTCAATAGTAATACAGAAAATATTGCATATATAAGTG GAATTATTGATTTAATTGATGAGACTCAAACAAATCTACTAGAAATATGTGATGTAGTACATCCCATAAAAAATATTATT AAATTATTTTTAGATGTGGAATATGATGTAGAATTTAATTCCATTGATGATGTACTAAACTATTTAATCGATGCAATAAA CACACATCTTCTAAAATAA
Upstream 100 bases:
>100_bases TAGTGGCAATCCTACGAGACTCTGGATCTTGTGACAGCGGTTCGACTCCGCTAAGGACTACTTTTTATTCTATTTTTAGG TTGATTATGGAGTTTTATGT
Downstream 100 bases:
>100_bases TCTTTTTTTTTAAAAAGAAAAGGTGGGTAATTATATGAGTATTATTGGTAGGTCCACATTTTTAAGTGTTGCTTCTGTAA AACTACCAATTACTCTTGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 352; Mature: 351
Protein sequence:
>352_residues MSGFYSEKIFTNELFDVFKQDAAIVVYLKKENNLIISSWINGGYQENLKYIVNQTLDGTDYDEMVSMDYSTFQTRCMEKI NLNPNESAGMATSACMDNYAISVYEYKDLKVTSIVTAGADNNGIKAGDPASFYEHNNEYNLDVGTINIITIIDANLEPGT LITASITATEAKTSVLQDLKLESQFSTHIATGTGTDGICVISNKSSENHIENAGKHSKLGEIIAKSVQEATRKALYLQTE MCISYQKSVLNRLSRFNIDFDTFYNKTEGITKTDYAMKFNNFNSNTENIAYISGIIDLIDETQTNLLEICDVVHPIKNII KLFLDVEYDVEFNSIDDVLNYLIDAINTHLLK
Sequences:
>Translated_352_residues MSGFYSEKIFTNELFDVFKQDAAIVVYLKKENNLIISSWINGGYQENLKYIVNQTLDGTDYDEMVSMDYSTFQTRCMEKI NLNPNESAGMATSACMDNYAISVYEYKDLKVTSIVTAGADNNGIKAGDPASFYEHNNEYNLDVGTINIITIIDANLEPGT LITASITATEAKTSVLQDLKLESQFSTHIATGTGTDGICVISNKSSENHIENAGKHSKLGEIIAKSVQEATRKALYLQTE MCISYQKSVLNRLSRFNIDFDTFYNKTEGITKTDYAMKFNNFNSNTENIAYISGIIDLIDETQTNLLEICDVVHPIKNII KLFLDVEYDVEFNSIDDVLNYLIDAINTHLLK >Mature_351_residues SGFYSEKIFTNELFDVFKQDAAIVVYLKKENNLIISSWINGGYQENLKYIVNQTLDGTDYDEMVSMDYSTFQTRCMEKIN LNPNESAGMATSACMDNYAISVYEYKDLKVTSIVTAGADNNGIKAGDPASFYEHNNEYNLDVGTINIITIIDANLEPGTL ITASITATEAKTSVLQDLKLESQFSTHIATGTGTDGICVISNKSSENHIENAGKHSKLGEIIAKSVQEATRKALYLQTEM CISYQKSVLNRLSRFNIDFDTFYNKTEGITKTDYAMKFNNFNSNTENIAYISGIIDLIDETQTNLLEICDVVHPIKNIIK LFLDVEYDVEFNSIDDVLNYLIDAINTHLLK
Specific function: Unknown
COG id: COG1865
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002808 [H]
Pfam domain/function: PF01955 CbiZ [H]
EC number: NA
Molecular weight: Translated: 39444; Mature: 39312
Theoretical pI: Translated: 4.32; Mature: 4.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGFYSEKIFTNELFDVFKQDAAIVVYLKKENNLIISSWINGGYQENLKYIVNQTLDGTD CCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC YDEMVSMDYSTFQTRCMEKINLNPNESAGMATSACMDNYAISVYEYKDLKVTSIVTAGAD HHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCEEEEEEECCEEEEEEEEECCC NNGIKAGDPASFYEHNNEYNLDVGTINIITIIDANLEPGTLITASITATEAKTSVLQDLK CCCCCCCCCHHHHHCCCEEEEEECEEEEEEEEECCCCCCEEEEEEEEHHHHHHHHHHHHH LESQFSTHIATGTGTDGICVISNKSSENHIENAGKHSKLGEIIAKSVQEATRKALYLQTE HHHHHHHEEECCCCCCCEEEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH MCISYQKSVLNRLSRFNIDFDTFYNKTEGITKTDYAMKFNNFNSNTENIAYISGIIDLID HHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHH ETQTNLLEICDVVHPIKNIIKLFLDVEYDVEFNSIDDVLNYLIDAINTHLLK HHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SGFYSEKIFTNELFDVFKQDAAIVVYLKKENNLIISSWINGGYQENLKYIVNQTLDGTD CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC YDEMVSMDYSTFQTRCMEKINLNPNESAGMATSACMDNYAISVYEYKDLKVTSIVTAGAD HHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCEEEEEEECCEEEEEEEEECCC NNGIKAGDPASFYEHNNEYNLDVGTINIITIIDANLEPGTLITASITATEAKTSVLQDLK CCCCCCCCCHHHHHCCCEEEEEECEEEEEEEEECCCCCCEEEEEEEEHHHHHHHHHHHHH LESQFSTHIATGTGTDGICVISNKSSENHIENAGKHSKLGEIIAKSVQEATRKALYLQTE HHHHHHHEEECCCCCCCEEEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH MCISYQKSVLNRLSRFNIDFDTFYNKTEGITKTDYAMKFNNFNSNTENIAYISGIIDLID HHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHH ETQTNLLEICDVVHPIKNIIKLFLDVEYDVEFNSIDDVLNYLIDAINTHLLK HHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]