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The map label for this gene is rpl10e

Identifier: 84489148

GI number: 84489148

Start: 386428

End: 386913

Strand: Direct

Name: rpl10e

Synonym: Msp_0327

Alternate gene names: 84489148

Gene position: 386428-386913 (Clockwise)

Preceding gene: 84489146

Following gene: 84489149

Centisome position: 21.86

GC content: 34.36

Gene sequence:

>486_bases
ATGGTTAGACCATACACAAGAAAAGATTATATTAGAAAAATCCCAGCATCAAAAATTGTACAGTATGATATGGGTAATTT
ATCTGGAGAATTTCCATTAGAAGTAACATTAGCAGTTAAAGAACACACACATTTATCACACAATTCTTTAGAAGCTGCAA
GGATTGCTGCAAACAGATATTTACAAAGAACAACTGGTAAATTAGGTTACAGATTAAAAATAAGAACATATCCTCACCAC
ATAGTAAGAGAAAATCCTATGGCTACTGGTGCAGGGGCAGATAGGGTACAAAGTGGTATGAGAGGAGCATTTGGTAAAGC
AGTAAGTTCAGAAGCTTTAGTACGTGCAAACCAAAAAATCATCACTGCATATGTTCAAGTAAAAGACTTTGAAAAAGCAA
AAGTTGCACTTAACAGAGCAGCAATGAAATTACCAGTAACCTGTAAATTAGTAATTGATAAAGGACACGACCTTGTTCAA
TTCTAG

Upstream 100 bases:

>100_bases
AATAATTTTAAAGAATACTATTTATTGTATTATTAATGAATTTTTTTTAAATATTTTTTTTATAGAAAAAAAGTATTTAT
TTTTACAGGAGGAAAAATCA

Downstream 100 bases:

>100_bases
ATATAGGTTATGGTTATAAATTCATAAAAAGGATTCAATAATAGAATAAATAGTGGAATTTATATAACCACACTATGGTT
AATTTTAATCCTTTATATGG

Product: 50S ribosomal protein L10e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MVRPYTRKDYIRKIPASKIVQYDMGNLSGEFPLEVTLAVKEHTHLSHNSLEAARIAANRYLQRTTGKLGYRLKIRTYPHH
IVRENPMATGAGADRVQSGMRGAFGKAVSSEALVRANQKIITAYVQVKDFEKAKVALNRAAMKLPVTCKLVIDKGHDLVQ
F

Sequences:

>Translated_161_residues
MVRPYTRKDYIRKIPASKIVQYDMGNLSGEFPLEVTLAVKEHTHLSHNSLEAARIAANRYLQRTTGKLGYRLKIRTYPHH
IVRENPMATGAGADRVQSGMRGAFGKAVSSEALVRANQKIITAYVQVKDFEKAKVALNRAAMKLPVTCKLVIDKGHDLVQ
F
>Mature_161_residues
MVRPYTRKDYIRKIPASKIVQYDMGNLSGEFPLEVTLAVKEHTHLSHNSLEAARIAANRYLQRTTGKLGYRLKIRTYPHH
IVRENPMATGAGADRVQSGMRGAFGKAVSSEALVRANQKIITAYVQVKDFEKAKVALNRAAMKLPVTCKLVIDKGHDLVQ
F

Specific function: Unknown

COG id: COG0197

COG function: function code J; Ribosomal protein L16/L10E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L10e family

Homologues:

Organism=Homo sapiens, GI223890243, Length=162, Percent_Identity=38.2716049382716, Blast_Score=119, Evalue=1e-27,
Organism=Homo sapiens, GI18152783, Length=162, Percent_Identity=37.6543209876543, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17533037, Length=146, Percent_Identity=38.3561643835616, Blast_Score=108, Evalue=9e-25,
Organism=Saccharomyces cerevisiae, GI6323104, Length=157, Percent_Identity=42.0382165605096, Blast_Score=111, Evalue=5e-26,
Organism=Drosophila melanogaster, GI221513696, Length=164, Percent_Identity=39.0243902439024, Blast_Score=114, Evalue=3e-26,
Organism=Drosophila melanogaster, GI221513692, Length=164, Percent_Identity=39.0243902439024, Blast_Score=114, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL10_METST (Q2NHZ0)

Other databases:

- EMBL:   CP000102
- RefSeq:   YP_447380.1
- ProteinModelPortal:   Q2NHZ0
- SMR:   Q2NHZ0
- STRING:   Q2NHZ0
- GeneID:   3854955
- GenomeReviews:   CP000102_GR
- KEGG:   mst:Msp_0327
- NMPDR:   fig|339860.6.peg.318
- eggNOG:   arNOG08034
- HOGENOM:   HBG512729
- OMA:   YTRREYI
- PhylomeDB:   Q2NHZ0
- ProtClustDB:   PRK04199
- BioCyc:   MSTA339860:MSP_0327-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00448
- InterPro:   IPR001197
- InterPro:   IPR016180
- InterPro:   IPR022981
- InterPro:   IPR018255
- PANTHER:   PTHR11726
- PIRSF:   PIRSF005590
- TIGRFAMs:   TIGR00279

Pfam domain/function: PF00252 Ribosomal_L16; SSF54686 Ribosomal_L10e/L16

EC number: NA

Molecular weight: Translated: 18033; Mature: 18033

Theoretical pI: Translated: 10.70; Mature: 10.70

Prosite motif: PS01257 RIBOSOMAL_L10E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRPYTRKDYIRKIPASKIVQYDMGNLSGEFPLEVTLAVKEHTHLSHNSLEAARIAANRY
CCCCCCHHHHHHHCCHHHHEEECCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHH
LQRTTGKLGYRLKIRTYPHHIVRENPMATGAGADRVQSGMRGAFGKAVSSEALVRANQKI
HHHHCCCCEEEEEEEECCHHHHCCCCCCCCCCHHHHHHHHCHHHHHHHCHHHHHHCCCEE
ITAYVQVKDFEKAKVALNRAAMKLPVTCKLVIDKGHDLVQF
EEEEEEECCCHHHHHHHHHHHEECCEEEEEEEECCCCCCCC
>Mature Secondary Structure
MVRPYTRKDYIRKIPASKIVQYDMGNLSGEFPLEVTLAVKEHTHLSHNSLEAARIAANRY
CCCCCCHHHHHHHCCHHHHEEECCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHH
LQRTTGKLGYRLKIRTYPHHIVRENPMATGAGADRVQSGMRGAFGKAVSSEALVRANQKI
HHHHCCCCEEEEEEEECCHHHHCCCCCCCCCCHHHHHHHHCHHHHHHHCHHHHHHCCCEE
ITAYVQVKDFEKAKVALNRAAMKLPVTCKLVIDKGHDLVQF
EEEEEEECCCHHHHHHHHHHHEECCEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA