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The map label for this gene is mtrD

Identifier: 84489122

GI number: 84489122

Start: 361988

End: 362686

Strand: Direct

Name: mtrD

Synonym: Msp_0301

Alternate gene names: 84489122

Gene position: 361988-362686 (Clockwise)

Preceding gene: 84489121

Following gene: 84489123

Centisome position: 20.48

GC content: 31.76

Gene sequence:

>699_bases
ATGATATTTGAATTATTAATTAGTATAATAATAGGATCTACATTAATAGGATTTGGAGTTCATTTTATACCTGTAGGTGG
AGCACCAGCAGCATTATCTACAACTGCTGGAGTACCTACAGGAGCACCTATGATAACTATTGGTATGGGAATTACAGGAA
TACTTTCAGCTCTTTCAATGACGGGTCAGTCAGAAATAGTAATAATTCTATCAGGAGCAATAGGTTCAATGCTTATGATG
GCTGTAACAATGTTTTTTTCAAATATGATACATGTTTATGGGGTAGGTGTTCCATTGGCATCTTCAAACTTTGAAAGGGA
TCCAATTACAGGTTTTAAACAGGAAGAATATGTAAGTCCTGGAACAACAGGTCATGGAATACCAACAGTTTCATTTATAA
GTGGGGTTATTGGAGCATTATTTGGAGGAATTGGTGGAAGTTTGGCATTTTGGGCAATTTATAATTATATATTGGGAAAT
TGTCATCTTTCATCAATCTACACAAATTCTATTTCAGCAATACTTGCAGTAATGTTATTTTTTATTATTGCAGTAGTAGC
ATCATACAATATTGGTGGTACAATACAAGGATTTTATGATAAGAAATTTAGGAAAAAAATAGTTTCAGGTACATTTTCAT
GTTTTTTAATATCAATATTCTTGGCTATTATTTATATGATAATATTGGGTGGAATTTAA

Upstream 100 bases:

>100_bases
GATTAATAGTAGGATTAATATTGGTTATTTTTTTAATAATACTAAATTATGTATTGGAACGAAATGCACGTTTAATATAT
GGAAAATATGGGGAATAATA

Downstream 100 bases:

>100_bases
ATGGCTGATGATTTAATACCTTCTCAGATAATAATTTTAAGTTCTATTGTTGGCGGATTAATTTGTATAGCACTAAGTAG
TATACCTGTGGTTGGTGGTA

Product: tetrahydromethanopterin S-methyltransferase subunit D

Products: NA

Alternate protein names: N5-methyltetrahydromethanopterin--coenzyme M methyltransferase subunit D [H]

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MIFELLISIIIGSTLIGFGVHFIPVGGAPAALSTTAGVPTGAPMITIGMGITGILSALSMTGQSEIVIILSGAIGSMLMM
AVTMFFSNMIHVYGVGVPLASSNFERDPITGFKQEEYVSPGTTGHGIPTVSFISGVIGALFGGIGGSLAFWAIYNYILGN
CHLSSIYTNSISAILAVMLFFIIAVVASYNIGGTIQGFYDKKFRKKIVSGTFSCFLISIFLAIIYMIILGGI

Sequences:

>Translated_232_residues
MIFELLISIIIGSTLIGFGVHFIPVGGAPAALSTTAGVPTGAPMITIGMGITGILSALSMTGQSEIVIILSGAIGSMLMM
AVTMFFSNMIHVYGVGVPLASSNFERDPITGFKQEEYVSPGTTGHGIPTVSFISGVIGALFGGIGGSLAFWAIYNYILGN
CHLSSIYTNSISAILAVMLFFIIAVVASYNIGGTIQGFYDKKFRKKIVSGTFSCFLISIFLAIIYMIILGGI
>Mature_232_residues
MIFELLISIIIGSTLIGFGVHFIPVGGAPAALSTTAGVPTGAPMITIGMGITGILSALSMTGQSEIVIILSGAIGSMLMM
AVTMFFSNMIHVYGVGVPLASSNFERDPITGFKQEEYVSPGTTGHGIPTVSFISGVIGALFGGIGGSLAFWAIYNYILGN
CHLSSIYTNSISAILAVMLFFIIAVVASYNIGGTIQGFYDKKFRKKIVSGTFSCFLISIFLAIIYMIILGGI

Specific function: Part of a complex that catalyzes the formation of methyl-coenzyme M and tetrahydromethanopterin from coenzyme M and methyl-tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step [H]

COG id: COG4060

COG function: function code H; Tetrahydromethanopterin S-methyltransferase, subunit D

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mtrD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005779
- ProDom:   PD013594 [H]

Pfam domain/function: PF04207 MtrD [H]

EC number: =2.1.1.86 [H]

Molecular weight: Translated: 24262; Mature: 24262

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFELLISIIIGSTLIGFGVHFIPVGGAPAALSTTAGVPTGAPMITIGMGITGILSALSM
CHHHHHHHHHHHHHHHHCCHHEEECCCCCCHHHCCCCCCCCCCCEEECCCHHHHHHHHHC
TGQSEIVIILSGAIGSMLMMAVTMFFSNMIHVYGVGVPLASSNFERDPITGFKQEEYVSP
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCC
GTTGHGIPTVSFISGVIGALFGGIGGSLAFWAIYNYILGNCHLSSIYTNSISAILAVMLF
CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
FIIAVVASYNIGGTIQGFYDKKFRKKIVSGTFSCFLISIFLAIIYMIILGGI
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIFELLISIIIGSTLIGFGVHFIPVGGAPAALSTTAGVPTGAPMITIGMGITGILSALSM
CHHHHHHHHHHHHHHHHCCHHEEECCCCCCHHHCCCCCCCCCCCEEECCCHHHHHHHHHC
TGQSEIVIILSGAIGSMLMMAVTMFFSNMIHVYGVGVPLASSNFERDPITGFKQEEYVSP
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCC
GTTGHGIPTVSFISGVIGALFGGIGGSLAFWAIYNYILGNCHLSSIYTNSISAILAVMLF
CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
FIIAVVASYNIGGTIQGFYDKKFRKKIVSGTFSCFLISIFLAIIYMIILGGI
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]