Click here to switch to the map view.

The map label for this gene is ompW [H]

Identifier: 83721271

GI number: 83721271

Start: 1618057

End: 1618881

Strand: Direct

Name: ompW [H]

Synonym: BTH_I1433

Alternate gene names: 83721271

Gene position: 1618057-1618881 (Clockwise)

Preceding gene: 83720553

Following gene: 83718771

Centisome position: 42.48

GC content: 64.61

Gene sequence:

>825_bases
ATGAAGAAGCTGATTGCCGCGTGCGTCGTTGCCGGTGCATCGACGGGCGCTTTCGCGCAGCAGGCGGGCGACGTGGTCGC
GACGCTCGGCTGGCTCCACGTGATGCCGCAGGATTCGACCAACGGCCTGACCACCAACGTCGTGAATTCTCCGATCAACG
GGCCGCTGCGGCTGCCCGGTTCGTTCACGTCGCCGGGCACGAGCCTCACGGTCAACAATGCGGACACGGTAGGCCTCACG
TTCACGTACTTCTTCACCGATCATATCGCGGTGACGTCCGTGCTCGGGATTCCGCCGGAATTCGCGCTGACGGGGCACGG
CGTCATCAAGCCGCCGGGCCCGTCGGGCTCGCTCGGCAGCGTCGATCTCGGCAATCCCGCGAACCAGCCCGCCGTGAAGA
ACGCGCGGCAATGGAGCCCGACGATCATCCTGAACTACTACTTCAATTCGCCGACCGCGAAGTTCCGGCCGTTCGTCGGG
ATCGGCGTTGCATACAGCTGGTTCTCGAACATCGAGCTCAACGGCAATTTCGCGAAGGACATCAACGACAACCTCGGCAG
CGTGCTCGCCGCGGGCGCCGGCAAGCCGGGGCCGACGTCGGTCGAGGGCAAGGCGTCGTCGTCGTTCACGCCGGTCTACA
ACGTCGGCGCGAGCTACGCGTTCGCGAAAAACTGGGCGCTGACGGCGACGCTGTCGTACATGCCGCTCAAGACGTACTCG
TCGCTCGTCATCAAGGCCGCCGACGGCACGACGCTCGCGACGACGCGCACGAAGCTGAAGGCCGATCCGCTCATCACGTT
CGTCGGGATTTCCTACAAGTTCTGA

Upstream 100 bases:

>100_bases
GGTGGGCGCTTTCGTGCAGTGAGCATCGCGCAGAACAGGAGACACAGGCGATACGCTGCCCGCGGGCGCGCATCGCACGA
TTGAAGTATCAGGAGACCTC

Downstream 100 bases:

>100_bases
GCCGCGGGCGTGCGATGCCGGCGCCCGGGCTTCCTGTGACCGAGCGGACCGAGATTCGTCGGCCGCAACGTCACGCCACC
GGCGGCAAGCCGCCATTCGT

Product: OmpW family outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MKKLIAACVVAGASTGAFAQQAGDVVATLGWLHVMPQDSTNGLTTNVVNSPINGPLRLPGSFTSPGTSLTVNNADTVGLT
FTYFFTDHIAVTSVLGIPPEFALTGHGVIKPPGPSGSLGSVDLGNPANQPAVKNARQWSPTIILNYYFNSPTAKFRPFVG
IGVAYSWFSNIELNGNFAKDINDNLGSVLAAGAGKPGPTSVEGKASSSFTPVYNVGASYAFAKNWALTATLSYMPLKTYS
SLVIKAADGTTLATTRTKLKADPLITFVGISYKF

Sequences:

>Translated_274_residues
MKKLIAACVVAGASTGAFAQQAGDVVATLGWLHVMPQDSTNGLTTNVVNSPINGPLRLPGSFTSPGTSLTVNNADTVGLT
FTYFFTDHIAVTSVLGIPPEFALTGHGVIKPPGPSGSLGSVDLGNPANQPAVKNARQWSPTIILNYYFNSPTAKFRPFVG
IGVAYSWFSNIELNGNFAKDINDNLGSVLAAGAGKPGPTSVEGKASSSFTPVYNVGASYAFAKNWALTATLSYMPLKTYS
SLVIKAADGTTLATTRTKLKADPLITFVGISYKF
>Mature_274_residues
MKKLIAACVVAGASTGAFAQQAGDVVATLGWLHVMPQDSTNGLTTNVVNSPINGPLRLPGSFTSPGTSLTVNNADTVGLT
FTYFFTDHIAVTSVLGIPPEFALTGHGVIKPPGPSGSLGSVDLGNPANQPAVKNARQWSPTIILNYYFNSPTAKFRPFVG
IGVAYSWFSNIELNGNFAKDINDNLGSVLAAGAGKPGPTSVEGKASSSFTPVYNVGASYAFAKNWALTATLSYMPLKTYS
SLVIKAADGTTLATTRTKLKADPLITFVGISYKF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 28574; Mature: 28574

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLIAACVVAGASTGAFAQQAGDVVATLGWLHVMPQDSTNGLTTNVVNSPINGPLRLPG
CHHHHEEHHHHCCCCCHHHHHHCCHHEEEEEEEEECCCCCCCEEEEEECCCCCCCEECCC
SFTSPGTSLTVNNADTVGLTFTYFFTDHIAVTSVLGIPPEFALTGHGVIKPPGPSGSLGS
CCCCCCCEEEECCCCEEEEEEEEEEHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCCC
VDLGNPANQPAVKNARQWSPTIILNYYFNSPTAKFRPFVGIGVAYSWFSNIELNGNFAKD
EECCCCCCCCHHCCCCCCCCEEEEEEEECCCCCCCCCEEEECEEEEECCCEEECCCCCCC
INDNLGSVLAAGAGKPGPTSVEGKASSSFTPVYNVGASYAFAKNWALTATLSYMPLKTYS
CCCCHHHHEECCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCEEEEEEEEECCCCCCC
SLVIKAADGTTLATTRTKLKADPLITFVGISYKF
EEEEEECCCCEEEEECCCCCCCCEEEEEEEEECC
>Mature Secondary Structure
MKKLIAACVVAGASTGAFAQQAGDVVATLGWLHVMPQDSTNGLTTNVVNSPINGPLRLPG
CHHHHEEHHHHCCCCCHHHHHHCCHHEEEEEEEEECCCCCCCEEEEEECCCCCCCEECCC
SFTSPGTSLTVNNADTVGLTFTYFFTDHIAVTSVLGIPPEFALTGHGVIKPPGPSGSLGS
CCCCCCCEEEECCCCEEEEEEEEEEHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCCC
VDLGNPANQPAVKNARQWSPTIILNYYFNSPTAKFRPFVGIGVAYSWFSNIELNGNFAKD
EECCCCCCCCHHCCCCCCCCEEEEEEEECCCCCCCCCEEEECEEEEECCCEEECCCCCCC
INDNLGSVLAAGAGKPGPTSVEGKASSSFTPVYNVGASYAFAKNWALTATLSYMPLKTYS
CCCCHHHHEECCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCEEEEEEEEECCCCCCC
SLVIKAADGTTLATTRTKLKADPLITFVGISYKF
EEEEEECCCCEEEEECCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2336399; 10952301 [H]