Click here to switch to the map view.

The map label for this gene is ykgD [C]

Identifier: 83721074

GI number: 83721074

Start: 1384376

End: 1385335

Strand: Reverse

Name: ykgD [C]

Synonym: BTH_I1236

Alternate gene names: 83721074

Gene position: 1385335-1384376 (Counterclockwise)

Preceding gene: 83719020

Following gene: 83721394

Centisome position: 36.37

GC content: 68.44

Gene sequence:

>960_bases
GTGACAGTGAGCGGAGTTGCCAATGTAGCGCATGCATTGAGACAATATGCGTCGATAAATCCCAATCGCTTGACCAATCG
TCCCATGAACGATCGTTTGAAGGGCCTCCTCGCCCGTTTCGAACTGCACGCCCGCGTATTCCACTTCGGCACGCTGCCCG
GCGCGTCGACCTTCGACATCTGCGCGGACGGTTTTCACATGCACCTGGTGCGCACGGGCGCAGTCTGCGTGACGGGCGGC
ACGCTCGGCCTTCACGCGGTGCCCGAGCCAAGCGCGGTCTTCATCGGGCGGCCCGGCAAGTACCGGATCGAGGCGCGCGG
CGATGCGCCCGTCGAGATCTTGTCCGCGGCGATCGAGTTCGGGCTCGGCGACGAAAATCCGCTGTTGCGCGGCCTGCCCG
ATCTGCTCGCGATTCCGCTGGCGTCGATGTCGCCGCTCGACGGCGTCCAGCAAGCGCTGTTCGCCGAGGCGAGCGCGCCC
GCGTGCGGGCACGACACGGTGATCAACCGGCTGACGGAGGTGCTCGTCGTGCAATTGCTGCGCTTCGTGATGCGCAACCG
GCTGGTCGCGAGCGGGTCGCTCGCCGGGCTGTCGGACGCGCGGCTCGCGAAGGCGCTGAATGCGGTGCACGCGGACCCGG
CCCTGTCATGGTCGCTCGAGCGGATGGCCGCGATCGCCGGCATGTCGCGCTCGCGGTTCGCCGCGCACTTCGCGGACACG
GTCGGCCTGCCGCCGGGCGAGTACCTGCTTCAGTGGCGCGTCGGGCTCGCGAAAACGCTGCTCAGACGCGGCTATGCGGT
CAAGGAAATCGCGCCGGAAGTCGGTTACGGCAGCGCGAGCGCGCTGACACGCGCATTCGCGCAATGCACGGGACACGCGC
CGACCGATTGGCTCGCGCGCGCGAGCGACGCGCCGCGCGCAACCGGCACGATGCCGGACATCGACGTGCGGGCGGCATGA

Upstream 100 bases:

>100_bases
TACGGCAAGCCGGCCTCCTCGAGGAACAACGCGATCTTGGCCGGGTTCGGCGACGGGTGATAGAAGAATCGGATCATCGA
CTGGGTCCTCCTCGTCATGC

Downstream 100 bases:

>100_bases
GCGAACCAAAGGAAGAAAGGACGAAGCCGAATGGACGCAAACTCGGCGCACGTCGGCGGCGGCTTCGCCGCGCGTGCCGT
CCATATGCAAAAAACGGGGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MTVSGVANVAHALRQYASINPNRLTNRPMNDRLKGLLARFELHARVFHFGTLPGASTFDICADGFHMHLVRTGAVCVTGG
TLGLHAVPEPSAVFIGRPGKYRIEARGDAPVEILSAAIEFGLGDENPLLRGLPDLLAIPLASMSPLDGVQQALFAEASAP
ACGHDTVINRLTEVLVVQLLRFVMRNRLVASGSLAGLSDARLAKALNAVHADPALSWSLERMAAIAGMSRSRFAAHFADT
VGLPPGEYLLQWRVGLAKTLLRRGYAVKEIAPEVGYGSASALTRAFAQCTGHAPTDWLARASDAPRATGTMPDIDVRAA

Sequences:

>Translated_319_residues
MTVSGVANVAHALRQYASINPNRLTNRPMNDRLKGLLARFELHARVFHFGTLPGASTFDICADGFHMHLVRTGAVCVTGG
TLGLHAVPEPSAVFIGRPGKYRIEARGDAPVEILSAAIEFGLGDENPLLRGLPDLLAIPLASMSPLDGVQQALFAEASAP
ACGHDTVINRLTEVLVVQLLRFVMRNRLVASGSLAGLSDARLAKALNAVHADPALSWSLERMAAIAGMSRSRFAAHFADT
VGLPPGEYLLQWRVGLAKTLLRRGYAVKEIAPEVGYGSASALTRAFAQCTGHAPTDWLARASDAPRATGTMPDIDVRAA
>Mature_318_residues
TVSGVANVAHALRQYASINPNRLTNRPMNDRLKGLLARFELHARVFHFGTLPGASTFDICADGFHMHLVRTGAVCVTGGT
LGLHAVPEPSAVFIGRPGKYRIEARGDAPVEILSAAIEFGLGDENPLLRGLPDLLAIPLASMSPLDGVQQALFAEASAPA
CGHDTVINRLTEVLVVQLLRFVMRNRLVASGSLAGLSDARLAKALNAVHADPALSWSLERMAAIAGMSRSRFAAHFADTV
GLPPGEYLLQWRVGLAKTLLRRGYAVKEIAPEVGYGSASALTRAFAQCTGHAPTDWLARASDAPRATGTMPDIDVRAA

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33885; Mature: 33754

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVSGVANVAHALRQYASINPNRLTNRPMNDRLKGLLARFELHARVFHFGTLPGASTFDI
CCCCHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHH
CADGFHMHLVRTGAVCVTGGTLGLHAVPEPSAVFIGRPGKYRIEARGDAPVEILSAAIEF
HHCCCEEEEEECCCEEEECCCCCEEECCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHH
GLGDENPLLRGLPDLLAIPLASMSPLDGVQQALFAEASAPACGHDTVINRLTEVLVVQLL
CCCCCCCHHHCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
RFVMRNRLVASGSLAGLSDARLAKALNAVHADPALSWSLERMAAIAGMSRSRFAAHFADT
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
VGLPPGEYLLQWRVGLAKTLLRRGYAVKEIAPEVGYGSASALTRAFAQCTGHAPTDWLAR
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHH
ASDAPRATGTMPDIDVRAA
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TVSGVANVAHALRQYASINPNRLTNRPMNDRLKGLLARFELHARVFHFGTLPGASTFDI
CCCHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHH
CADGFHMHLVRTGAVCVTGGTLGLHAVPEPSAVFIGRPGKYRIEARGDAPVEILSAAIEF
HHCCCEEEEEECCCEEEECCCCCEEECCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHH
GLGDENPLLRGLPDLLAIPLASMSPLDGVQQALFAEASAPACGHDTVINRLTEVLVVQLL
CCCCCCCHHHCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
RFVMRNRLVASGSLAGLSDARLAKALNAVHADPALSWSLERMAAIAGMSRSRFAAHFADT
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
VGLPPGEYLLQWRVGLAKTLLRRGYAVKEIAPEVGYGSASALTRAFAQCTGHAPTDWLAR
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHH
ASDAPRATGTMPDIDVRAA
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1332944 [H]