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The map label for this gene is degU [H]

Identifier: 83720601

GI number: 83720601

Start: 2082319

End: 2083020

Strand: Reverse

Name: degU [H]

Synonym: BTH_I1849

Alternate gene names: 83720601

Gene position: 2083020-2082319 (Counterclockwise)

Preceding gene: 83721110

Following gene: 83719708

Centisome position: 54.68

GC content: 68.95

Gene sequence:

>702_bases
ATGACCATACGCGTACTGTTGATCGACGACCACACGCTCTTTCGCAGCGGCGTCAAGCTGCTGTTGCAGCGCCAGCCGGA
TTTCGAAGTCGTCGACGAGGCGTCCGACGGCGTCGAGGGCGTGAAGCGCGCGAAGCAGCATCAGCCCGACGTGATCCTGC
TCGACCTGAACATGCCGGGGCTGTCGGGGCTCGAAACGCTGCAACTGCTCGTGCAGGACGTGCCGTCCGCGCATGTCGTG
ATCCTCACGGTGTCGGAAGATGCGCAAGAGCTGACGACCGCGCTGCGCGACGGCGCGTGCGGCTTCCTCGTGAAGAACAT
CGACGCGGAGACGCTCGTCGCGGGCATCCGCAAGGCTGCCGCGGGCGAGCCTGTGATCGCCGAGAGCATGACCGCGAAGT
GGATCGCCAGCCTGCGCGCGCCCGCGCCCGCCGCGCGGCCCGCGCCGGCCCCGGCCGCGACGCCCGCCGCGCATGTGCCG
GTCGATCCCGACCAGTTGACGCCGCGCGAGCACGACATCGTGCGCGCGCTCGCGCGCGGCGCGAGCAACAAGGAGATCGC
GCGCGAGTTCGACGTCGCCGAAAGCACGGTGAAGATCCACGTGCAGAACGTCCTGAAGAAGCTGAACCTGTCGAGCCGCG
TGCAGATCGCCGTGTATGCGGTCGAGCGAGGCCTCACCGCGCCGCATCCGGCCGAGGCCTGA

Upstream 100 bases:

>100_bases
TCACGTTGACGGGCGCACCGCAACGCGGCGCGCGCGTCGAGCTGGTGTTGCCGGCCGACGCGCGACAGGCGGCATAGAAA
CAAGAACGAGGACAACAATC

Downstream 100 bases:

>100_bases
GCGAGAACGACGGCCGCGCGCGGATGACGGCGCGAGCCGCATGATTCGCGGCGACATCGTCCTTCGCCGCTTCACCGCGC
CGCCGATCGAATGACCGAAG

Product: DNA-binding response regulator NarL

Products: NA

Alternate protein names: Protease production enhancer protein [H]

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MTIRVLLIDDHTLFRSGVKLLLQRQPDFEVVDEASDGVEGVKRAKQHQPDVILLDLNMPGLSGLETLQLLVQDVPSAHVV
ILTVSEDAQELTTALRDGACGFLVKNIDAETLVAGIRKAAAGEPVIAESMTAKWIASLRAPAPAARPAPAPAATPAAHVP
VDPDQLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVERGLTAPHPAEA

Sequences:

>Translated_233_residues
MTIRVLLIDDHTLFRSGVKLLLQRQPDFEVVDEASDGVEGVKRAKQHQPDVILLDLNMPGLSGLETLQLLVQDVPSAHVV
ILTVSEDAQELTTALRDGACGFLVKNIDAETLVAGIRKAAAGEPVIAESMTAKWIASLRAPAPAARPAPAPAATPAAHVP
VDPDQLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVERGLTAPHPAEA
>Mature_232_residues
TIRVLLIDDHTLFRSGVKLLLQRQPDFEVVDEASDGVEGVKRAKQHQPDVILLDLNMPGLSGLETLQLLVQDVPSAHVVI
LTVSEDAQELTTALRDGACGFLVKNIDAETLVAGIRKAAAGEPVIAESMTAKWIASLRAPAPAARPAPAPAATPAAHVPV
DPDQLTPREHDIVRALARGASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVERGLTAPHPAEA

Specific function: Regulating factor for the production of extracellular proteases. The N-terminal region acts as an inhibitor, whereas the C-terminal region carries enhancing activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1787473, Length=215, Percent_Identity=46.046511627907, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1788521, Length=223, Percent_Identity=38.1165919282511, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1788222, Length=224, Percent_Identity=27.6785714285714, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1790102, Length=215, Percent_Identity=32.093023255814, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1786747, Length=216, Percent_Identity=26.8518518518519, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788712, Length=218, Percent_Identity=22.9357798165138, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI87082052, Length=126, Percent_Identity=34.1269841269841, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24944; Mature: 24813

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIRVLLIDDHTLFRSGVKLLLQRQPDFEVVDEASDGVEGVKRAKQHQPDVILLDLNMPG
CEEEEEEECCHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHCCCCEEEEECCCCC
LSGLETLQLLVQDVPSAHVVILTVSEDAQELTTALRDGACGFLVKNIDAETLVAGIRKAA
CCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHC
AGEPVIAESMTAKWIASLRAPAPAARPAPAPAATPAAHVPVDPDQLTPREHDIVRALARG
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
ASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVERGLTAPHPAEA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCC
>Mature Secondary Structure 
TIRVLLIDDHTLFRSGVKLLLQRQPDFEVVDEASDGVEGVKRAKQHQPDVILLDLNMPG
EEEEEEECCHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHCCCCEEEEECCCCC
LSGLETLQLLVQDVPSAHVVILTVSEDAQELTTALRDGACGFLVKNIDAETLVAGIRKAA
CCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHC
AGEPVIAESMTAKWIASLRAPAPAARPAPAPAATPAAHVPVDPDQLTPREHDIVRALARG
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
ASNKEIAREFDVAESTVKIHVQNVLKKLNLSSRVQIAVYAVERGLTAPHPAEA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3136143; 3141378; 3141377; 9384377 [H]