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The map label for this gene is yagI [H]

Identifier: 83720359

GI number: 83720359

Start: 2115791

End: 2116603

Strand: Reverse

Name: yagI [H]

Synonym: BTH_I1869

Alternate gene names: 83720359

Gene position: 2116603-2115791 (Counterclockwise)

Preceding gene: 83720600

Following gene: 83718918

Centisome position: 55.57

GC content: 68.39

Gene sequence:

>813_bases
ATGAGCAACCCGAACCCGGATTCCAAAACGTCGATCCAGGTGATCGAACGGATGATGCGGCTCCTCGATGCGCTCGCCGC
GCACAGCGACCCGGTCAGCCTGAAGGAGCTCGCGCAGCGCACCGAGCTGCATCCGTCCACCGCGCACCGGATCTTGAACG
ACATGGTGACCTGCCGCCTCGTCGACCGGTCCGATCCCGGCACGTATCGGCTCGGCATGCGCCTGCTCGAGCTCGGCAAC
CTCGTGAAGGCGCGCCTGTCGGTGCGGGACGCGGCGCTGATGCCGATGCGCGAGCTGCACCGGCTGACGGGGCAGACCGT
GAACCTGTCGGTGCGCCAGGGCGACGAAATCGTCTACATCGAGCGCGCGTACTCGGAGCGCTCCGGGATGCAGGTCGTGC
GCGCGATCGGCGGCCGCGCGCCGCTGCACCTGACCTCGGTCGGCAAGCTGTTCCTCGCGGCCGACGAGACGTCGCGGGTG
CGCGCGTACGCGACGCGCACGGGCCTTGCCGGCCATACGCAGAACAGCATCACCGACCTGCCGAAGCTCGAGCGCGAATT
GACGCTCGTGCGCCAGCAAGCATGCGCGCGCGACAACGAGGAACTGGAGCTGGGCGTGCGCTGCATCGCAGCCGGCATCT
ATGACGATTCGGGCAAGCTGGTCGCGGGGCTGTCTCTGTCCGCGCCCGCCGACCGGCTGCAGGATGCGTGGCTCGGCCAG
TTGAGCCGCACGGCGCTCACGATCTCCGAATCGCTCGGCTATCGTCCGGAAACCGCGAAGGAAATCGACGCGCCGGCGCA
AAAGCAGGCGTAG

Upstream 100 bases:

>100_bases
GCGACGCCGAACGAGGACTTCCTCGAACACCGTTCGCTTTTTTCACGATACGAGATACAATCGTCGCATTGGTATTTGAT
GCGGCAACCGATTTCCCACG

Downstream 100 bases:

>100_bases
TAGGCGCGCTTGCGTCTGCCGGCCGCCTTCCGCGGTCGGCGCGAACGAAAAAAGCCCCGCATTCGCGGGGCTTTTTGCTG
AGTGGCGCCACGCTTGGCGC

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MSNPNPDSKTSIQVIERMMRLLDALAAHSDPVSLKELAQRTELHPSTAHRILNDMVTCRLVDRSDPGTYRLGMRLLELGN
LVKARLSVRDAALMPMRELHRLTGQTVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADETSRV
RAYATRTGLAGHTQNSITDLPKLERELTLVRQQACARDNEELELGVRCIAAGIYDDSGKLVAGLSLSAPADRLQDAWLGQ
LSRTALTISESLGYRPETAKEIDAPAQKQA

Sequences:

>Translated_270_residues
MSNPNPDSKTSIQVIERMMRLLDALAAHSDPVSLKELAQRTELHPSTAHRILNDMVTCRLVDRSDPGTYRLGMRLLELGN
LVKARLSVRDAALMPMRELHRLTGQTVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADETSRV
RAYATRTGLAGHTQNSITDLPKLERELTLVRQQACARDNEELELGVRCIAAGIYDDSGKLVAGLSLSAPADRLQDAWLGQ
LSRTALTISESLGYRPETAKEIDAPAQKQA
>Mature_269_residues
SNPNPDSKTSIQVIERMMRLLDALAAHSDPVSLKELAQRTELHPSTAHRILNDMVTCRLVDRSDPGTYRLGMRLLELGNL
VKARLSVRDAALMPMRELHRLTGQTVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADETSRVR
AYATRTGLAGHTQNSITDLPKLERELTLVRQQACARDNEELELGVRCIAAGIYDDSGKLVAGLSLSAPADRLQDAWLGQL
SRTALTISESLGYRPETAKEIDAPAQKQA

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=253, Percent_Identity=32.8063241106719, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1788131, Length=258, Percent_Identity=33.3333333333333, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1789999, Length=250, Percent_Identity=30.8, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1786715, Length=255, Percent_Identity=30.9803921568627, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87082359, Length=230, Percent_Identity=31.7391304347826, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1790752, Length=231, Percent_Identity=28.1385281385281, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1788581, Length=253, Percent_Identity=25.296442687747, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 29705; Mature: 29574

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNPNPDSKTSIQVIERMMRLLDALAAHSDPVSLKELAQRTELHPSTAHRILNDMVTCRL
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHEEEE
VDRSDPGTYRLGMRLLELGNLVKARLSVRDAALMPMRELHRLTGQTVNLSVRQGDEIVYI
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCEEEEE
ERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADETSRVRAYATRTGLAGHTQNSITDL
EECCCHHHHHHHHHHHCCCCCEEEHHHCEEEEEECCCHHHHHHHHHCCCCCCCCCHHHHH
PKLERELTLVRQQACARDNEELELGVRCIAAGIYDDSGKLVAGLSLSAPADRLQDAWLGQ
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHEECEECCCCCEEEEEECCCCHHHHHHHHHHH
LSRTALTISESLGYRPETAKEIDAPAQKQA
HHHHHHHHHHHCCCCCCCHHHCCCCCCCCC
>Mature Secondary Structure 
SNPNPDSKTSIQVIERMMRLLDALAAHSDPVSLKELAQRTELHPSTAHRILNDMVTCRL
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHEEEE
VDRSDPGTYRLGMRLLELGNLVKARLSVRDAALMPMRELHRLTGQTVNLSVRQGDEIVYI
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCEEEEE
ERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADETSRVRAYATRTGLAGHTQNSITDL
EECCCHHHHHHHHHHHCCCCCEEEHHHCEEEEEECCCHHHHHHHHHCCCCCCCCCHHHHH
PKLERELTLVRQQACARDNEELELGVRCIAAGIYDDSGKLVAGLSLSAPADRLQDAWLGQ
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHEECEECCCCCEEEEEECCCCHHHHHHHHHHH
LSRTALTISESLGYRPETAKEIDAPAQKQA
HHHHHHHHHHHCCCCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]