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The map label for this gene is rfbB [C]

Identifier: 83719479

GI number: 83719479

Start: 1671594

End: 1672685

Strand: Direct

Name: rfbB [C]

Synonym: BTH_I1476

Alternate gene names: 83719479

Gene position: 1671594-1672685 (Clockwise)

Preceding gene: 83720650

Following gene: 83721331

Centisome position: 43.88

GC content: 61.26

Gene sequence:

>1092_bases
ATGAGCGACGTGAATGCAAGCTTGGTTGACGGGAAGAAGATCCTCGTGACCGGTGGGGCTGGCTTTATCGGCTGCGCGAT
ATCGGAGCGACTCGCAGCGCGTGCAAGCCGCTACGTCGTAATGGACAACTTGCATCCGCAGATCCATGCGAACGCGGTTC
GTCCTGTCGCGCTTCACGAGAAAGCGGAACTCGTCGTTGCCGACGTCACGGACGCCGGTGCATGGGATGCGCTGCTGAGC
GATTTCCAACCGGAAATCATCATACATCTGGCCGCCGAAACGGGCACTGGCCAATCGTTGACGGAAGCGAGCCGGCATGC
ACTCGTCAACGTCGTCGGCACCACGCGGCTGACGGACGCGATCGTCAAGCATGGCATCGCGGTCGAGCACATCCTGCTGA
CGAGCAGCCGAGCAGTCTATGGCGAAGGCGCATGGCAGAAGGCAGATGGCACGATCGTCTATCCCGGCCAACGCGGGCGT
GCCCAACTCGAGGCCGCGCAATGGGATTTCCCGGGGATGACGATGCTGCCTTCGCGCGCGGACCGTACCGAGCCGCGGCC
GACGAGCGTCTATGGGGCGACGAAGCTTGCGCAGGAACACGTACTTCGTGCATGGTCGCTCGCGACGAAAACGCCGCTAT
CGATTTTGCGTCTGCAGAACGTTTATGGCCCCGGTCAATCGTTGACCAACTCCTATACCGGCATCGTCGCGCTTTTCTCT
CGGCTTGCTCGAGAAAAGAAGGTGATTCCGCTCTACGAAGACGGCAATGTGACGCGCGATTTCGTCAGCATCGACGATGT
TGCCGACGCCATTGTCGCGACGTTGGCGCGCGAGCCGGAAGCGCTCTCCCTTTTCGATATCGGCTCCGGGCAAGCGACGA
GCATTCTCGACATGGCTCGAATCATCGCGGCGCATTACGGTGCTCCCGAGCCGCAGGTCAACGGCGCATTCCGCGACGGA
GATGTGCGCCACGCGGCGTGCGATCTGAGCGAATCGTTGGCGAATCTCGGATGGAAGCCGCAGTGGTCGCTCGAACGCGG
GATCGGCGAATTGCAGACCTGGATCGCGCAAGAGCTTGATCGCAAGAACTAG

Upstream 100 bases:

>100_bases
ATCTGATCGAGAAACGCGCACTGGCGTTGAAGGATTGGGGGCCCGGACAAGGATGGAAGTACTGTTTGGCTAGATTGACT
ATGAAGAAAGAGGGAGTGTG

Downstream 100 bases:

>100_bases
TCATACATCAGAGGTTACAAGTGCCACTGCACGATACGACAATCATCGGTCCCGCGTCCTTGCGGATTCAGTCGGTCCTG
TATAACAACAGTCAGCAGCA

Product: UDP-glucose 4-epimerase

Products: NA

Alternate protein names: Galactowaldenase; UDP-galactose 4-epimerase [H]

Number of amino acids: Translated: 363; Mature: 362

Protein sequence:

>363_residues
MSDVNASLVDGKKILVTGGAGFIGCAISERLAARASRYVVMDNLHPQIHANAVRPVALHEKAELVVADVTDAGAWDALLS
DFQPEIIIHLAAETGTGQSLTEASRHALVNVVGTTRLTDAIVKHGIAVEHILLTSSRAVYGEGAWQKADGTIVYPGQRGR
AQLEAAQWDFPGMTMLPSRADRTEPRPTSVYGATKLAQEHVLRAWSLATKTPLSILRLQNVYGPGQSLTNSYTGIVALFS
RLAREKKVIPLYEDGNVTRDFVSIDDVADAIVATLAREPEALSLFDIGSGQATSILDMARIIAAHYGAPEPQVNGAFRDG
DVRHAACDLSESLANLGWKPQWSLERGIGELQTWIAQELDRKN

Sequences:

>Translated_363_residues
MSDVNASLVDGKKILVTGGAGFIGCAISERLAARASRYVVMDNLHPQIHANAVRPVALHEKAELVVADVTDAGAWDALLS
DFQPEIIIHLAAETGTGQSLTEASRHALVNVVGTTRLTDAIVKHGIAVEHILLTSSRAVYGEGAWQKADGTIVYPGQRGR
AQLEAAQWDFPGMTMLPSRADRTEPRPTSVYGATKLAQEHVLRAWSLATKTPLSILRLQNVYGPGQSLTNSYTGIVALFS
RLAREKKVIPLYEDGNVTRDFVSIDDVADAIVATLAREPEALSLFDIGSGQATSILDMARIIAAHYGAPEPQVNGAFRDG
DVRHAACDLSESLANLGWKPQWSLERGIGELQTWIAQELDRKN
>Mature_362_residues
SDVNASLVDGKKILVTGGAGFIGCAISERLAARASRYVVMDNLHPQIHANAVRPVALHEKAELVVADVTDAGAWDALLSD
FQPEIIIHLAAETGTGQSLTEASRHALVNVVGTTRLTDAIVKHGIAVEHILLTSSRAVYGEGAWQKADGTIVYPGQRGRA
QLEAAQWDFPGMTMLPSRADRTEPRPTSVYGATKLAQEHVLRAWSLATKTPLSILRLQNVYGPGQSLTNSYTGIVALFSR
LAREKKVIPLYEDGNVTRDFVSIDDVADAIVATLAREPEALSLFDIGSGQATSILDMARIIAAHYGAPEPQVNGAFRDGD
VRHAACDLSESLANLGWKPQWSLERGIGELQTWIAQELDRKN

Specific function: DTDP-L-RHAMNOSE BIOSYNTHESIS WITHIN THE O ANTIGEN BIOSYNTHESIS PATHWAY OF LIPOPOLYSACCHARIDE BIOSYNTHESIS. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family [H]

Homologues:

Organism=Homo sapiens, GI56237023, Length=371, Percent_Identity=26.1455525606469, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI56118217, Length=371, Percent_Identity=26.1455525606469, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI189083684, Length=371, Percent_Identity=26.1455525606469, Blast_Score=97, Evalue=2e-20,
Organism=Escherichia coli, GI1788353, Length=351, Percent_Identity=27.6353276353276, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI48994969, Length=369, Percent_Identity=27.10027100271, Blast_Score=97, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17568069, Length=298, Percent_Identity=24.8322147651007, Blast_Score=85, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI115532424, Length=348, Percent_Identity=21.264367816092, Blast_Score=75, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6319493, Length=368, Percent_Identity=23.6413043478261, Blast_Score=80, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: =5.1.3.2 [H]

Molecular weight: Translated: 39160; Mature: 39029

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDVNASLVDGKKILVTGGAGFIGCAISERLAARASRYVVMDNLHPQIHANAVRPVALHE
CCCCCCEEECCCEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCCCCEECCCCCEEEECC
KAELVVADVTDAGAWDALLSDFQPEIIIHLAAETGTGQSLTEASRHALVNVVGTTRLTDA
CCEEEEEECCCCCHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHEEHHHHHHHHHHH
IVKHGIAVEHILLTSSRAVYGEGAWQKADGTIVYPGQRGRAQLEAAQWDFPGMTMLPSRA
HHHCCCHHEEEEEECCCEEECCCCEECCCCCEEECCCCCCCHHHHHCCCCCCCEECCCCC
DRTEPRPTSVYGATKLAQEHVLRAWSLATKTPLSILRLQNVYGPGQSLTNSYTGIVALFS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
RLAREKKVIPLYEDGNVTRDFVSIDDVADAIVATLAREPEALSLFDIGSGQATSILDMAR
HHHHCCCCEEEECCCCCEEHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH
IIAAHYGAPEPQVNGAFRDGDVRHAACDLSESLANLGWKPQWSLERGIGELQTWIAQELD
HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
RKN
CCC
>Mature Secondary Structure 
SDVNASLVDGKKILVTGGAGFIGCAISERLAARASRYVVMDNLHPQIHANAVRPVALHE
CCCCCEEECCCEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCCCCEECCCCCEEEECC
KAELVVADVTDAGAWDALLSDFQPEIIIHLAAETGTGQSLTEASRHALVNVVGTTRLTDA
CCEEEEEECCCCCHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHEEHHHHHHHHHHH
IVKHGIAVEHILLTSSRAVYGEGAWQKADGTIVYPGQRGRAQLEAAQWDFPGMTMLPSRA
HHHCCCHHEEEEEECCCEEECCCCEECCCCCEEECCCCCCCHHHHHCCCCCCCEECCCCC
DRTEPRPTSVYGATKLAQEHVLRAWSLATKTPLSILRLQNVYGPGQSLTNSYTGIVALFS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
RLAREKKVIPLYEDGNVTRDFVSIDDVADAIVATLAREPEALSLFDIGSGQATSILDMAR
HHHHCCCCEEEECCCCCEEHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH
IIAAHYGAPEPQVNGAFRDGDVRHAACDLSESLANLGWKPQWSLERGIGELQTWIAQELD
HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
RKN
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]