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The map label for this gene is ydeP [H]

Identifier: 83718795

GI number: 83718795

Start: 1622354

End: 1622779

Strand: Direct

Name: ydeP [H]

Synonym: BTH_I1437

Alternate gene names: 83718795

Gene position: 1622354-1622779 (Clockwise)

Preceding gene: 83719753

Following gene: 83718997

Centisome position: 42.59

GC content: 62.91

Gene sequence:

>426_bases
ATGCGACCGAAGCGTTCCGACAGCAAGAGCGGGTGTTCCGTCGAGGTGACCCTTTCCGTCATCGGCGGATTGTGGAAGCC
CGTGATCCTGTTTCATCTCTTGAAGGAGAAAAAGCGCTTCATGGAGCTCACGCGCCTGATGCCGAACACGACGCAGAGAA
TGCTGACGCTGCAATTGCGCGAACTCGAGGCGGACGGCATCGTCGCGCGCCACGTCTATCCGCAGGTGCCGCCGAAGGTC
GAATATGAACTGACGCCGTTTGGCACGACGCTCGCGCCCGTACTGATCAGCTTGCGCGAATGGGGCGACGCGTATCGGAC
GCATCAGTCGGGCGCCGGTTCGGCCGAGTCTGCACGCGATGCAGCGACGTGCGACGCACCGACTCAGTCGCGCAAACGCA
CGGCCGGCGCGATGAAGGCCGTGTAG

Upstream 100 bases:

>100_bases
CCTGAGATCGGCGGCGGATGGGCAAATTGTCCGCACGTACTTCCTTTGATGCAAGAACGTACAATTAACGCCGGTACTAT
CAATTTTGTAGGTAAGCGCG

Downstream 100 bases:

>100_bases
CGCGCCGGCGGGCGCGAATCGGCCGGGGTGTGCCTTCGCCCGGATCGATGGGTGGTTTTCCGGCTGGCCAGTGTTGGCGC
GCTGGCGACTTCATGCAACG

Product: transcriptional regulator family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MRPKRSDSKSGCSVEVTLSVIGGLWKPVILFHLLKEKKRFMELTRLMPNTTQRMLTLQLRELEADGIVARHVYPQVPPKV
EYELTPFGTTLAPVLISLREWGDAYRTHQSGAGSAESARDAATCDAPTQSRKRTAGAMKAV

Sequences:

>Translated_141_residues
MRPKRSDSKSGCSVEVTLSVIGGLWKPVILFHLLKEKKRFMELTRLMPNTTQRMLTLQLRELEADGIVARHVYPQVPPKV
EYELTPFGTTLAPVLISLREWGDAYRTHQSGAGSAESARDAATCDAPTQSRKRTAGAMKAV
>Mature_141_residues
MRPKRSDSKSGCSVEVTLSVIGGLWKPVILFHLLKEKKRFMELTRLMPNTTQRMLTLQLRELEADGIVARHVYPQVPPKV
EYELTPFGTTLAPVLISLREWGDAYRTHQSGAGSAESARDAATCDAPTQSRKRTAGAMKAV

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=90, Percent_Identity=35.5555555555556, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 15652; Mature: 15652

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPKRSDSKSGCSVEVTLSVIGGLWKPVILFHLLKEKKRFMELTRLMPNTTQRMLTLQLR
CCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ELEADGIVARHVYPQVPPKVEYELTPFGTTLAPVLISLREWGDAYRTHQSGAGSAESARD
HHCCCCEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
AATCDAPTQSRKRTAGAMKAV
CCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MRPKRSDSKSGCSVEVTLSVIGGLWKPVILFHLLKEKKRFMELTRLMPNTTQRMLTLQLR
CCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
ELEADGIVARHVYPQVPPKVEYELTPFGTTLAPVLISLREWGDAYRTHQSGAGSAESARD
HHCCCCEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
AATCDAPTQSRKRTAGAMKAV
CCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]