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The map label for this gene is yjfH [C]

Identifier: 83594035

GI number: 83594035

Start: 3127112

End: 3128158

Strand: Direct

Name: yjfH [C]

Synonym: Rru_A2703

Alternate gene names: 83594035

Gene position: 3127112-3128158 (Clockwise)

Preceding gene: 83593987

Following gene: 83594036

Centisome position: 71.84

GC content: 72.68

Gene sequence:

>1047_bases
ATGAAATATGGAAACAGCCTCGCGGTGTCAATGATAAAGTGGTGTCCGATGTTCTTTCTTTGCAGACAGGGGGCTTGCGA
TGGGGCACCTTCCCCACCCTTTTCCCCTCCCCGCGACCCGGAGCCCGCCATGACCCGCCCGCCGCGCCGCCCATCCCGCG
CCCCCTCTTCGACCGAGTCCTCCGCGGCGCCGGCCGGTCGTCCCCTCCCCCGCCCCGCCGCCGGTGCCGGCTCCACCGCC
CGCCCGCCCCGTCCGCCCGCGCCGCGCGGCGAAGCCGATGGGGCCTCGCGCCGCCCCGAGCCCGCCGCCCGCGGCAAGCG
CCCTGGAGGGCGCGGCGATGGCGGTCTGTGGCTGTTTGGTCGCCACGCCGTGGAGGCCGCCCTGCAGAACCCCGAGCGCA
AAGCCCTGCGTTTGCTCGCCCTCGCCGGCGCCGCCGAGGGGCTGCCCAAGGGCGGGCCGACGGTCGAGCCCGCCGACCGC
GAGGCGATCGAAGCCGTGGTGCCGCCGGGCGCCGTCCACCAGGGTCTGGCCCTCAAGGTGGCGCCGCTGTCCCAGCCCAC
CGTCGAGGAGATCGCCCGCATCCCCGGTCCCTCGGTGGTCGCCATCCTCGATCAGGTGTCCGACCCCCATAACATCGGCG
CCGTCCTGCGCTCGGCCGCCGCCTTCGGCATCCGCGCCGTCGTCGTCCAGGACCGCCATTCGCCCGAGGAAACCGGCACC
CTGGCCAAATCGGCCAGCGGCACCCTGGAACGCGTGCCGCTGGTCCGCGCCATCAACCTGTCCCAGGCCCTTGATACCTT
CAAGGAGCACGGCTTCTGGTGCGCCGGCCTCGACGCCTCGGCCGAGACCACCCTGGCCGAGGCCGCCCTGCCCGAGCGTT
GCGTCGTCGTGCTGGGCAGCGAGGGCGCCGGCCTGCGCCGGTTGGTGCGCGATCACTGCGATCTGCTGGTCAAACTGGCG
ATGGATAGCGGCGTTGAAAGCCTGAATGTGTCCAACGCCGCCGCCGTGACCTTCTACGAACTCAGCGGTCGCGGCCTGCG
CCCCTGA

Upstream 100 bases:

>100_bases
CCAGCGTAGGGTTACCCCGCCGGATTTACAGTCCGGTGCCTTTAACCACTCGACCACCCCTCCGCAAGACCCGTTAATCC
GGCCCCCGGCGGCGGAGGAC

Downstream 100 bases:

>100_bases
TCACCCCCTTGCCCGCCCACGCCCTTTGCGTTTATGAAGGGCGCAGGCGGGCATGACGCCGGATTAGCTCAGTTGGTAGA
GCACCTGATTTGTAATCAGG

Product: RNA methyltransferase TrmH, group 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MKYGNSLAVSMIKWCPMFFLCRQGACDGAPSPPFSPPRDPEPAMTRPPRRPSRAPSSTESSAAPAGRPLPRPAAGAGSTA
RPPRPPAPRGEADGASRRPEPAARGKRPGGRGDGGLWLFGRHAVEAALQNPERKALRLLALAGAAEGLPKGGPTVEPADR
EAIEAVVPPGAVHQGLALKVAPLSQPTVEEIARIPGPSVVAILDQVSDPHNIGAVLRSAAAFGIRAVVVQDRHSPEETGT
LAKSASGTLERVPLVRAINLSQALDTFKEHGFWCAGLDASAETTLAEAALPERCVVVLGSEGAGLRRLVRDHCDLLVKLA
MDSGVESLNVSNAAAVTFYELSGRGLRP

Sequences:

>Translated_348_residues
MKYGNSLAVSMIKWCPMFFLCRQGACDGAPSPPFSPPRDPEPAMTRPPRRPSRAPSSTESSAAPAGRPLPRPAAGAGSTA
RPPRPPAPRGEADGASRRPEPAARGKRPGGRGDGGLWLFGRHAVEAALQNPERKALRLLALAGAAEGLPKGGPTVEPADR
EAIEAVVPPGAVHQGLALKVAPLSQPTVEEIARIPGPSVVAILDQVSDPHNIGAVLRSAAAFGIRAVVVQDRHSPEETGT
LAKSASGTLERVPLVRAINLSQALDTFKEHGFWCAGLDASAETTLAEAALPERCVVVLGSEGAGLRRLVRDHCDLLVKLA
MDSGVESLNVSNAAAVTFYELSGRGLRP
>Mature_348_residues
MKYGNSLAVSMIKWCPMFFLCRQGACDGAPSPPFSPPRDPEPAMTRPPRRPSRAPSSTESSAAPAGRPLPRPAAGAGSTA
RPPRPPAPRGEADGASRRPEPAARGKRPGGRGDGGLWLFGRHAVEAALQNPERKALRLLALAGAAEGLPKGGPTVEPADR
EAIEAVVPPGAVHQGLALKVAPLSQPTVEEIARIPGPSVVAILDQVSDPHNIGAVLRSAAAFGIRAVVVQDRHSPEETGT
LAKSASGTLERVPLVRAINLSQALDTFKEHGFWCAGLDASAETTLAEAALPERCVVVLGSEGAGLRRLVRDHCDLLVKLA
MDSGVESLNVSNAAAVTFYELSGRGLRP

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=280, Percent_Identity=30.7142857142857, Blast_Score=87, Evalue=2e-17,
Organism=Escherichia coli, GI1790623, Length=239, Percent_Identity=37.6569037656904, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1788935, Length=170, Percent_Identity=32.3529411764706, Blast_Score=87, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17555908, Length=261, Percent_Identity=27.9693486590038, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 36251; Mature: 36251

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYGNSLAVSMIKWCPMFFLCRQGACDGAPSPPFSPPRDPEPAMTRPPRRPSRAPSSTES
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SAAPAGRPLPRPAAGAGSTARPPRPPAPRGEADGASRRPEPAARGKRPGGRGDGGLWLFG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEH
RHAVEAALQNPERKALRLLALAGAAEGLPKGGPTVEPADREAIEAVVPPGAVHQGLALKV
HHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCHHHCCCEEEE
APLSQPTVEEIARIPGPSVVAILDQVSDPHNIGAVLRSAAAFGIRAVVVQDRHSPEETGT
ECCCCCHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCEEEEEEECCCCCHHHHH
LAKSASGTLERVPLVRAINLSQALDTFKEHGFWCAGLDASAETTLAEAALPERCVVVLGS
HHHHCCCCHHHCCHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHCCCCEEEEEECC
EGAGLRRLVRDHCDLLVKLAMDSGVESLNVSNAAAVTFYELSGRGLRP
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCC
>Mature Secondary Structure
MKYGNSLAVSMIKWCPMFFLCRQGACDGAPSPPFSPPRDPEPAMTRPPRRPSRAPSSTES
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
SAAPAGRPLPRPAAGAGSTARPPRPPAPRGEADGASRRPEPAARGKRPGGRGDGGLWLFG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEH
RHAVEAALQNPERKALRLLALAGAAEGLPKGGPTVEPADREAIEAVVPPGAVHQGLALKV
HHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCHHHCCCEEEE
APLSQPTVEEIARIPGPSVVAILDQVSDPHNIGAVLRSAAAFGIRAVVVQDRHSPEETGT
ECCCCCHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCEEEEEEECCCCCHHHHH
LAKSASGTLERVPLVRAINLSQALDTFKEHGFWCAGLDASAETTLAEAALPERCVVVLGS
HHHHCCCCHHHCCHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHCCCCEEEEEECC
EGAGLRRLVRDHCDLLVKLAMDSGVESLNVSNAAAVTFYELSGRGLRP
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]