Click here to switch to the map view.

The map label for this gene is rbn [C]

Identifier: 83593957

GI number: 83593957

Start: 3054237

End: 3055559

Strand: Direct

Name: rbn [C]

Synonym: Rru_A2625

Alternate gene names: 83593957

Gene position: 3054237-3055559 (Clockwise)

Preceding gene: 83593954

Following gene: 83593959

Centisome position: 70.17

GC content: 68.86

Gene sequence:

>1323_bases
ATGGTGGACGACGAAAACCGGCGGCGCGGGCTTTTGGGCCGCCGTTCGCACGCCCGCTCATGGCTGCCGGTGAAGCCACG
ACGGATCCTCGCCACCGCCGGAAGCTTCACGATTTTGGTGCTGCGCGCCCTGATCACCCATGACATTCCCCGGCTGGCGG
CGTCGTTGGCCTATACCTCACTGCTCGCCCTGGTGCCGCTGATCGCCATCGCCCTGGCCATCCTGGCGGCCTTTCCCGGC
TTTGGCGACGAGCGCGAGCGCATGGTCGCCTGGATCATCGAGACCTTCGTTCCCTATCGACGCACCGAGATCCTTGATCA
GGTCGAGCATTTCGTCGGCGCCGCCGCCGGTCTTACCGCCCTTGGCGTCGCCGGGCTGACGCTGACGGCGATCATCTTGC
TGCTGACCATCGAATCCTCGCTCAACGCCATTTTCAGGGTCGAGAAAAGCCGCCATCCCCTGGCCCGGCTGCTGGTCTAT
TGGTCGGTGCTGACCGGCGGGCCGCTGCTGATGGGCCTTAGTTTCTCGCTTTCGAGCTATCTGGTGGCGATCCGCCATCT
GGTCGGCACCGACGTGATGAGCCCCTTTGACGCCCTGACGCCGACGCTCGGCCCGCCCCTGCTGTCGCTGACGGCGATGA
CCTTGCTTTATATGCTGGTGCCCAACCGGCCGGTGCCGCTTTTTCACGCCCTGGCCGGCGCCCTGGTCGCCACCCTCGCC
TCGGCGCTGCTGCGCTCGGCCTTCCTGATGGTGATCACCCGCGGGCTGTCCTATGAAACCCTCTATGGGGCCCTGGCGGC
GCTGCCGGCCTTTCTGGTCTGGATGTATCTATCCTGGGCCGTCGTGCTGATGGGCGCGGTGACCGCGGCCGAGATCCCCA
ATTGGAAAATGGCCCGTCGCCTGACCCGGGCCGGGCAGGATGAACGGGCCGCCCGTCTGCGCATCGCCGTCGAAATCATG
GTCGCCGCCGCCCGCGCTTACGGCGAGGGCCAGGGCGACGGCGCCAGCCGTCGCGCCCTGTCCGCCCTGACCGCCACCCC
CGACCGCCGCCAGGCCGGGGTCTTGCGCGACCTCGACAAGGCCGGCCTGTTGATCCGCGATGAGGACGGCGCCGTCCTGC
CCGGACGCGATCCCCGGCGCATCACCCTGGCCGAGATCCTTCACGCCCTGACCCTGGCGCCGCCGACCGGCACCGTCGGC
GGCCCGGGCTGGCCCGATCTGCTGCGCCACGCCCTGGAAACCGCCGGCGGTGATTACGACCGGGCCCTGGGGCTCAGCCT
CGACGCTCTGGTCCAGGCCGAGCCGCTCGGCGCCCGGATATAA

Upstream 100 bases:

>100_bases
GACCGGCCCGTCTGAGGGCCGGTGAAAATCGGTTGAATCCCGTCCTTAGAGGACGGAAGGGCGGCATCCTACACCAAGAC
CTCCAGAAGGGCCAAGACGC

Downstream 100 bases:

>100_bases
GCGGGTCGGCGATCAGACCATGCCGGCCTGTTCGCGCGGGTCGGTCTCGGGGTCCTTCAGCTTCTTGACCAGGGTCTTGA
GCTTGGGGTCCACGGGATCG

Product: tRNA-processing RNAse BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MVDDENRRRGLLGRRSHARSWLPVKPRRILATAGSFTILVLRALITHDIPRLAASLAYTSLLALVPLIAIALAILAAFPG
FGDERERMVAWIIETFVPYRRTEILDQVEHFVGAAAGLTALGVAGLTLTAIILLLTIESSLNAIFRVEKSRHPLARLLVY
WSVLTGGPLLMGLSFSLSSYLVAIRHLVGTDVMSPFDALTPTLGPPLLSLTAMTLLYMLVPNRPVPLFHALAGALVATLA
SALLRSAFLMVITRGLSYETLYGALAALPAFLVWMYLSWAVVLMGAVTAAEIPNWKMARRLTRAGQDERAARLRIAVEIM
VAAARAYGEGQGDGASRRALSALTATPDRRQAGVLRDLDKAGLLIRDEDGAVLPGRDPRRITLAEILHALTLAPPTGTVG
GPGWPDLLRHALETAGGDYDRALGLSLDALVQAEPLGARI

Sequences:

>Translated_440_residues
MVDDENRRRGLLGRRSHARSWLPVKPRRILATAGSFTILVLRALITHDIPRLAASLAYTSLLALVPLIAIALAILAAFPG
FGDERERMVAWIIETFVPYRRTEILDQVEHFVGAAAGLTALGVAGLTLTAIILLLTIESSLNAIFRVEKSRHPLARLLVY
WSVLTGGPLLMGLSFSLSSYLVAIRHLVGTDVMSPFDALTPTLGPPLLSLTAMTLLYMLVPNRPVPLFHALAGALVATLA
SALLRSAFLMVITRGLSYETLYGALAALPAFLVWMYLSWAVVLMGAVTAAEIPNWKMARRLTRAGQDERAARLRIAVEIM
VAAARAYGEGQGDGASRRALSALTATPDRRQAGVLRDLDKAGLLIRDEDGAVLPGRDPRRITLAEILHALTLAPPTGTVG
GPGWPDLLRHALETAGGDYDRALGLSLDALVQAEPLGARI
>Mature_440_residues
MVDDENRRRGLLGRRSHARSWLPVKPRRILATAGSFTILVLRALITHDIPRLAASLAYTSLLALVPLIAIALAILAAFPG
FGDERERMVAWIIETFVPYRRTEILDQVEHFVGAAAGLTALGVAGLTLTAIILLLTIESSLNAIFRVEKSRHPLARLLVY
WSVLTGGPLLMGLSFSLSSYLVAIRHLVGTDVMSPFDALTPTLGPPLLSLTAMTLLYMLVPNRPVPLFHALAGALVATLA
SALLRSAFLMVITRGLSYETLYGALAALPAFLVWMYLSWAVVLMGAVTAAEIPNWKMARRLTRAGQDERAARLRIAVEIM
VAAARAYGEGQGDGASRRALSALTATPDRRQAGVLRDLDKAGLLIRDEDGAVLPGRDPRRITLAEILHALTLAPPTGTVG
GPGWPDLLRHALETAGGDYDRALGLSLDALVQAEPLGARI

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family

Homologues:

Organism=Escherichia coli, GI1790319, Length=265, Percent_Identity=38.4905660377359, Blast_Score=167, Evalue=9e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2625_RHORT (Q2RR23)

Other databases:

- EMBL:   CP000230
- RefSeq:   YP_427709.1
- ProteinModelPortal:   Q2RR23
- STRING:   Q2RR23
- GeneID:   3836060
- GenomeReviews:   CP000230_GR
- KEGG:   rru:Rru_A2625
- NMPDR:   fig|1085.1.peg.276
- HOGENOM:   HBG451793
- OMA:   YISWLIL
- PhylomeDB:   Q2RR23
- BioCyc:   RRUB269796:RRU_A2625-MONOMER
- HAMAP:   MF_00672
- InterPro:   IPR017039
- InterPro:   IPR004664
- TIGRFAMs:   TIGR00765

Pfam domain/function: PF03631 Ribonuclease_BN

EC number: 3.1.-.- [C]

Molecular weight: Translated: 47334; Mature: 47334

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x10a8d658)-; HASH(0x1150332c)-; HASH(0x10d34f58)-; HASH(0x1077b3e0)-; HASH(0x10c0e360)-; HASH(0x116802cc)-; HASH(0x11654208)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDDENRRRGLLGRRSHARSWLPVKPRRILATAGSFTILVLRALITHDIPRLAASLAYTS
CCCCCCCHHCCCCCHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LLALVPLIAIALAILAAFPGFGDERERMVAWIIETFVPYRRTEILDQVEHFVGAAAGLTA
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LGVAGLTLTAIILLLTIESSLNAIFRVEKSRHPLARLLVYWSVLTGGPLLMGLSFSLSSY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LVAIRHLVGTDVMSPFDALTPTLGPPLLSLTAMTLLYMLVPNRPVPLFHALAGALVATLA
HHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
SALLRSAFLMVITRGLSYETLYGALAALPAFLVWMYLSWAVVLMGAVTAAEIPNWKMARR
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LTRAGQDERAARLRIAVEIMVAAARAYGEGQGDGASRRALSALTATPDRRQAGVLRDLDK
HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
AGLLIRDEDGAVLPGRDPRRITLAEILHALTLAPPTGTVGGPGWPDLLRHALETAGGDYD
CCCEEECCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCH
RALGLSLDALVQAEPLGARI
HHHCCCHHHHHHCCCCCCCH
>Mature Secondary Structure
MVDDENRRRGLLGRRSHARSWLPVKPRRILATAGSFTILVLRALITHDIPRLAASLAYTS
CCCCCCCHHCCCCCHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LLALVPLIAIALAILAAFPGFGDERERMVAWIIETFVPYRRTEILDQVEHFVGAAAGLTA
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LGVAGLTLTAIILLLTIESSLNAIFRVEKSRHPLARLLVYWSVLTGGPLLMGLSFSLSSY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LVAIRHLVGTDVMSPFDALTPTLGPPLLSLTAMTLLYMLVPNRPVPLFHALAGALVATLA
HHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
SALLRSAFLMVITRGLSYETLYGALAALPAFLVWMYLSWAVVLMGAVTAAEIPNWKMARR
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LTRAGQDERAARLRIAVEIMVAAARAYGEGQGDGASRRALSALTATPDRRQAGVLRDLDK
HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
AGLLIRDEDGAVLPGRDPRRITLAEILHALTLAPPTGTVGGPGWPDLLRHALETAGGDYD
CCCEEECCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCH
RALGLSLDALVQAEPLGARI
HHHCCCHHHHHHCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA