Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
---|---|
Accession | NC_007643 |
Length | 4,352,825 |
Click here to switch to the map view.
The map label for this gene is 83593894
Identifier: 83593894
GI number: 83593894
Start: 2978191
End: 2980914
Strand: Direct
Name: 83593894
Synonym: Rru_A2559
Alternate gene names: NA
Gene position: 2978191-2980914 (Clockwise)
Preceding gene: 83593893
Following gene: 83593895
Centisome position: 68.42
GC content: 68.36
Gene sequence:
>2724_bases ATGACCGCCAATCAGACGGCCGCGCTGCAGGCCTTTCTTCCCGGAATGGACCTGCCCGCCTATCAGGCCCCTTCGGGCTT CGACGAGATGGTCGAAGCCGATGGATCCTTGCGACCGCGCTGGCGCCCGTTCATGGAATTGCTGGCCGCCCAACCGCCCG GGGAAATGGCCCGGCGCTGGGATCGCGGCCTGCGGCTGATCCGCGACGCCGGGATGACCCACACGGCGCCCGGCGGCCCA ACCGACGGCACGCCGGCCCGGCCGTGGACGCTCGATCCGGTGCCGCTGCTGCTCGATGCCCGGGAATGGGGCTATATCGA ATACGCCCTGACCCAGCGCGCCACCTTGTTCAACGCCGTTCTCGCCGATCTTTACGGCAACCGCGCCCTGCTCAACGAGG CCCAGGTGCCCCCCGCCCTGGTCCATGCCAATCCCGGGTTCCTGCGTCCGCTCCACGGGGTCAAGCCCAAGGACGGCACC TTCTTGCACTTCTACGCCGCCGATCTGGCCCGGGCCCCCGATGGCCGCTGGTGGGTGGTCAATGATCGCACCGAGACCCC CTCGGGGGCCGGCTACGCCCTGGAAAACCGCCTGATCATCAGCCGCATCCTGCCCGATTTCTATCGGGCGACCGAGGTTC AGCGCCTCGCCCCCTATTTCATGAAGCTGCGCGAGAACCTGACCCGGCTGGCGCCGCGACCGATCGACAATCCGCGCATC GTTGTCTGGACGCCGGGTCCCTATAACGCCACCCACCCCGAACACGCCTATCTCGCCCGCTATCTGGGGCTGACCCTGGT CGAGGGCGAGGACATGACCACCCGCGACCGCCGGGTTTATCTGAAAACCCTGGAGGGGTTGAAGCAGGTCGATGTCATCA TCCGCCATAACGGCGGGGGATTTTGCGATCCGCTGGAATTGCGTGGCGAAAGCACCCTCGGGGTGCCGGGACTGGTGGAA GCCGTCCATGCCGGCACGGTGACGGTGGCCAATGCCATCGGCTCGCGGCTGGTCGAGGCCCCGGCCTTCATGCCCTTCCT GCCGGCCTTGTGCCGGCGGCTGCTCGGCCAGGAACTGGTGATGCCATCGCTGGCGACTTGGTGGTGCGGCCAGGAGCGGG AATCGCGCTATGTGCGCGACCATCTTGATGATCTGGTGGTGCGCCCGGCCTTCAACGTCCACGCCCCGCCGATCGCCGTC AACCGCCTGGACGCCAAGGCCCGCGCCACCTTGCTGGCCGATCTCGCCGCCCGTCCCTGGGCCTATGTCGGACAGGAGGC GGCGATGGTGTCGACCACCCCGGTCTGGGAAGGCGGGCGGCTCACCCCGCGGCCGATGATCATGCGCGTTCACCTCGCCG CCTATGGCGACAGCTATGTGGTGATGCCGGGCGGCCTGACCCGCGTCGCCCCGCCCGGGGTCGATGACCAGCCCTGGCGG ATCAACGCCGATCGCGACGGCGGCGCCAAGGATACCTGGGTGCTGTCCGACGAGCCGGTGGCGCCGATCACCTTGTTGCG CGACAACGCCGAGCCGCCGCGCCGGGGCTCGCGCGACCTGCCCTCGCGGGTGACCGACAACACTTTCTGGCTGGGCCGCT ATGCCGAGCGCTGCGAGGATACCGCCCGGCTGTTGCGCAAGGCCTGCATGCTGGCGGCCGAAAACGGCTTTGGAGAACCC GAATTGGCGGTGGTTCTCTCGGTGATGGCCGGGCTTGGCCATCTGCCGGTCGAAGAGGATTACAGCGAGCCGACCGTGCA GGAGGCCGCCCTGCGCATCTTGCTGTCGATCAACGCCGACCCCGAGGAACCGCTGGGTCTGGTGGCCAATCTCGCCAATC TGCGCCGCGCCGCCAATGCCGTGCGCGATCGCCTGTCGGTCGACACCTGGCGGGTGGTCACCCGGCTGTGCGAAGCGCCC TTCGACGCCCCGGGAACGCGCGGACCGCTTGATCTGGAAACCCCACAAAGCCAGCTTGACGGGCTGATCATGACCCTGCT CGCCCTCGACGGGCTGGCCTTGGAAAACATGACGCGCGGCCTGGGCTGGCGCTTCCTCGATATCGGCCGGCGGCTGGAGC GGGCCCATCATGTTCTTGACCTGTTGAGCGCGCCGTTGATCGCCGATACCGCCGACATCGGCCCGGCGCTCGACGTCATC CTCGATATCAATGATTCGGCGATGACCTATCGCTCGCGTTACCTGTCCCTGCCCTCGCCGGCCCCCGTTCTCGACATTTT GCTCAGCGATGAAAGCAACCCGCGCTCGCTTGGCTATCAGGTCGCCTTGCTGGCCGAGCATATGGAGGTTCTGGCCCCCG ATCAGGCCTTCGGTCTGCGCACCGAGGAACAAAGGCTGATGATCCGCCTGCTGGCCAGCGTGCGGGCGACCGATCCGCGC GCCATCACCCTTGATCCCAAGCCCGAGGCCGGACAGATCGCGCTGTCGTCCCTGCTGAGCGACCTGCGCGACGGCTTGTC GGGCCTGGGGCACGCCCTGACCTTGCATTACTTCGCCCATGCCGTGGAAACCCGCGCCGATATCGCCGGCCACCCGGACC TCGAATCGGCCCAGGCGGACCATGCCGCCACCTTGCGCCCGCCGATCCACCCCATCCCCCCCAAACCGGAGTCCGCGCCC GTGTCCCCCCAGCGCGCCGCCCCCCCCTCGCCGCCAGCCCCTTCCCTCGCCGTTCCCGGCCCACAGCCGGAGGCCAAGGC GTGA
Upstream 100 bases:
>100_bases CGATGGCGGTGCCCGAGGACGAGCGCAATGACGACTTCCCGATGACGCTGGACCTGCGCCGCCGTCCCGGCCCATAAGGA GGTATCCGACGGAGACTCCC
Downstream 100 bases:
>100_bases CTCCCTTGCCGATCGTCGATCCGGGTCCGCCGGTTCTTTACGACGTGGAGCATGTGACCTCCTATCGCTACGCCCTGCCG GTCACCGTCTCCCACCAATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 907; Mature: 906
Protein sequence:
>907_residues MTANQTAALQAFLPGMDLPAYQAPSGFDEMVEADGSLRPRWRPFMELLAAQPPGEMARRWDRGLRLIRDAGMTHTAPGGP TDGTPARPWTLDPVPLLLDAREWGYIEYALTQRATLFNAVLADLYGNRALLNEAQVPPALVHANPGFLRPLHGVKPKDGT FLHFYAADLARAPDGRWWVVNDRTETPSGAGYALENRLIISRILPDFYRATEVQRLAPYFMKLRENLTRLAPRPIDNPRI VVWTPGPYNATHPEHAYLARYLGLTLVEGEDMTTRDRRVYLKTLEGLKQVDVIIRHNGGGFCDPLELRGESTLGVPGLVE AVHAGTVTVANAIGSRLVEAPAFMPFLPALCRRLLGQELVMPSLATWWCGQERESRYVRDHLDDLVVRPAFNVHAPPIAV NRLDAKARATLLADLAARPWAYVGQEAAMVSTTPVWEGGRLTPRPMIMRVHLAAYGDSYVVMPGGLTRVAPPGVDDQPWR INADRDGGAKDTWVLSDEPVAPITLLRDNAEPPRRGSRDLPSRVTDNTFWLGRYAERCEDTARLLRKACMLAAENGFGEP ELAVVLSVMAGLGHLPVEEDYSEPTVQEAALRILLSINADPEEPLGLVANLANLRRAANAVRDRLSVDTWRVVTRLCEAP FDAPGTRGPLDLETPQSQLDGLIMTLLALDGLALENMTRGLGWRFLDIGRRLERAHHVLDLLSAPLIADTADIGPALDVI LDINDSAMTYRSRYLSLPSPAPVLDILLSDESNPRSLGYQVALLAEHMEVLAPDQAFGLRTEEQRLMIRLLASVRATDPR AITLDPKPEAGQIALSSLLSDLRDGLSGLGHALTLHYFAHAVETRADIAGHPDLESAQADHAATLRPPIHPIPPKPESAP VSPQRAAPPSPPAPSLAVPGPQPEAKA
Sequences:
>Translated_907_residues MTANQTAALQAFLPGMDLPAYQAPSGFDEMVEADGSLRPRWRPFMELLAAQPPGEMARRWDRGLRLIRDAGMTHTAPGGP TDGTPARPWTLDPVPLLLDAREWGYIEYALTQRATLFNAVLADLYGNRALLNEAQVPPALVHANPGFLRPLHGVKPKDGT FLHFYAADLARAPDGRWWVVNDRTETPSGAGYALENRLIISRILPDFYRATEVQRLAPYFMKLRENLTRLAPRPIDNPRI VVWTPGPYNATHPEHAYLARYLGLTLVEGEDMTTRDRRVYLKTLEGLKQVDVIIRHNGGGFCDPLELRGESTLGVPGLVE AVHAGTVTVANAIGSRLVEAPAFMPFLPALCRRLLGQELVMPSLATWWCGQERESRYVRDHLDDLVVRPAFNVHAPPIAV NRLDAKARATLLADLAARPWAYVGQEAAMVSTTPVWEGGRLTPRPMIMRVHLAAYGDSYVVMPGGLTRVAPPGVDDQPWR INADRDGGAKDTWVLSDEPVAPITLLRDNAEPPRRGSRDLPSRVTDNTFWLGRYAERCEDTARLLRKACMLAAENGFGEP ELAVVLSVMAGLGHLPVEEDYSEPTVQEAALRILLSINADPEEPLGLVANLANLRRAANAVRDRLSVDTWRVVTRLCEAP FDAPGTRGPLDLETPQSQLDGLIMTLLALDGLALENMTRGLGWRFLDIGRRLERAHHVLDLLSAPLIADTADIGPALDVI LDINDSAMTYRSRYLSLPSPAPVLDILLSDESNPRSLGYQVALLAEHMEVLAPDQAFGLRTEEQRLMIRLLASVRATDPR AITLDPKPEAGQIALSSLLSDLRDGLSGLGHALTLHYFAHAVETRADIAGHPDLESAQADHAATLRPPIHPIPPKPESAP VSPQRAAPPSPPAPSLAVPGPQPEAKA >Mature_906_residues TANQTAALQAFLPGMDLPAYQAPSGFDEMVEADGSLRPRWRPFMELLAAQPPGEMARRWDRGLRLIRDAGMTHTAPGGPT DGTPARPWTLDPVPLLLDAREWGYIEYALTQRATLFNAVLADLYGNRALLNEAQVPPALVHANPGFLRPLHGVKPKDGTF LHFYAADLARAPDGRWWVVNDRTETPSGAGYALENRLIISRILPDFYRATEVQRLAPYFMKLRENLTRLAPRPIDNPRIV VWTPGPYNATHPEHAYLARYLGLTLVEGEDMTTRDRRVYLKTLEGLKQVDVIIRHNGGGFCDPLELRGESTLGVPGLVEA VHAGTVTVANAIGSRLVEAPAFMPFLPALCRRLLGQELVMPSLATWWCGQERESRYVRDHLDDLVVRPAFNVHAPPIAVN RLDAKARATLLADLAARPWAYVGQEAAMVSTTPVWEGGRLTPRPMIMRVHLAAYGDSYVVMPGGLTRVAPPGVDDQPWRI NADRDGGAKDTWVLSDEPVAPITLLRDNAEPPRRGSRDLPSRVTDNTFWLGRYAERCEDTARLLRKACMLAAENGFGEPE LAVVLSVMAGLGHLPVEEDYSEPTVQEAALRILLSINADPEEPLGLVANLANLRRAANAVRDRLSVDTWRVVTRLCEAPF DAPGTRGPLDLETPQSQLDGLIMTLLALDGLALENMTRGLGWRFLDIGRRLERAHHVLDLLSAPLIADTADIGPALDVIL DINDSAMTYRSRYLSLPSPAPVLDILLSDESNPRSLGYQVALLAEHMEVLAPDQAFGLRTEEQRLMIRLLASVRATDPRA ITLDPKPEAGQIALSSLLSDLRDGLSGLGHALTLHYFAHAVETRADIAGHPDLESAQADHAATLRPPIHPIPPKPESAPV SPQRAAPPSPPAPSLAVPGPQPEAKA
Specific function: Unknown
COG id: COG2308
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007296 - InterPro: IPR007297 - InterPro: IPR007302 [H]
Pfam domain/function: PF04168 DUF403; PF04169 DUF404; PF04174 DUF407 [H]
EC number: NA
Molecular weight: Translated: 99326; Mature: 99195
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTANQTAALQAFLPGMDLPAYQAPSGFDEMVEADGSLRPRWRPFMELLAAQPPGEMARRW CCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHH DRGLRLIRDAGMTHTAPGGPTDGTPARPWTLDPVPLLLDAREWGYIEYALTQRATLFNAV HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEHHHHHHHHHHHHH LADLYGNRALLNEAQVPPALVHANPGFLRPLHGVKPKDGTFLHFYAADLARAPDGRWWVV HHHHHCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHCCCCCCEEEE NDRTETPSGAGYALENRLIISRILPDFYRATEVQRLAPYFMKLRENLTRLAPRPIDNPRI ECCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE VVWTPGPYNATHPEHAYLARYLGLTLVEGEDMTTRDRRVYLKTLEGLKQVDVIIRHNGGG EEECCCCCCCCCCHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHEEEEEEECCCC FCDPLELRGESTLGVPGLVEAVHAGTVTVANAIGSRLVEAPAFMPFLPALCRRLLGQELV CCCHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH MPSLATWWCGQERESRYVRDHLDDLVVRPAFNVHAPPIAVNRLDAKARATLLADLAARPW HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCH AYVGQEAAMVSTTPVWEGGRLTPRPMIMRVHLAAYGDSYVVMPGGLTRVAPPGVDDQPWR HHHCCCCEEEECCCCCCCCCCCCCCEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCEE INADRDGGAKDTWVLSDEPVAPITLLRDNAEPPRRGSRDLPSRVTDNTFWLGRYAERCED EECCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCEEHHHHHHHHHH TARLLRKACMLAAENGFGEPELAVVLSVMAGLGHLPVEEDYSEPTVQEAALRILLSINAD HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHEEEEECCCC PEEPLGLVANLANLRRAANAVRDRLSVDTWRVVTRLCEAPFDAPGTRGPLDLETPQSQLD CCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH GLIMTLLALDGLALENMTRGLGWRFLDIGRRLERAHHVLDLLSAPLIADTADIGPALDVI HHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE LDINDSAMTYRSRYLSLPSPAPVLDILLSDESNPRSLGYQVALLAEHMEVLAPDQAFGLR EECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCC TEEQRLMIRLLASVRATDPRAITLDPKPEAGQIALSSLLSDLRDGLSGLGHALTLHYFAH CHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVETRADIAGHPDLESAQADHAATLRPPIHPIPPKPESAPVSPQRAAPPSPPAPSLAVPG HHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PQPEAKA CCCCCCC >Mature Secondary Structure TANQTAALQAFLPGMDLPAYQAPSGFDEMVEADGSLRPRWRPFMELLAAQPPGEMARRW CCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHH DRGLRLIRDAGMTHTAPGGPTDGTPARPWTLDPVPLLLDAREWGYIEYALTQRATLFNAV HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEHHHHHHHHHHHHH LADLYGNRALLNEAQVPPALVHANPGFLRPLHGVKPKDGTFLHFYAADLARAPDGRWWVV HHHHHCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHCCCCCCEEEE NDRTETPSGAGYALENRLIISRILPDFYRATEVQRLAPYFMKLRENLTRLAPRPIDNPRI ECCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE VVWTPGPYNATHPEHAYLARYLGLTLVEGEDMTTRDRRVYLKTLEGLKQVDVIIRHNGGG EEECCCCCCCCCCHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHEEEEEEECCCC FCDPLELRGESTLGVPGLVEAVHAGTVTVANAIGSRLVEAPAFMPFLPALCRRLLGQELV CCCHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH MPSLATWWCGQERESRYVRDHLDDLVVRPAFNVHAPPIAVNRLDAKARATLLADLAARPW HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCH AYVGQEAAMVSTTPVWEGGRLTPRPMIMRVHLAAYGDSYVVMPGGLTRVAPPGVDDQPWR HHHCCCCEEEECCCCCCCCCCCCCCEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCEE INADRDGGAKDTWVLSDEPVAPITLLRDNAEPPRRGSRDLPSRVTDNTFWLGRYAERCED EECCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCEEHHHHHHHHHH TARLLRKACMLAAENGFGEPELAVVLSVMAGLGHLPVEEDYSEPTVQEAALRILLSINAD HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHEEEEECCCC PEEPLGLVANLANLRRAANAVRDRLSVDTWRVVTRLCEAPFDAPGTRGPLDLETPQSQLD CCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH GLIMTLLALDGLALENMTRGLGWRFLDIGRRLERAHHVLDLLSAPLIADTADIGPALDVI HHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE LDINDSAMTYRSRYLSLPSPAPVLDILLSDESNPRSLGYQVALLAEHMEVLAPDQAFGLR EECCCCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCC TEEQRLMIRLLASVRATDPRAITLDPKPEAGQIALSSLLSDLRDGLSGLGHALTLHYFAH CHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVETRADIAGHPDLESAQADHAATLRPPIHPIPPKPESAPVSPQRAAPPSPPAPSLAVPG HHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PQPEAKA CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]