Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
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Accession | NC_007643 |
Length | 4,352,825 |
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The map label for this gene is ttuD [H]
Identifier: 83593799
GI number: 83593799
Start: 2863425
End: 2864690
Strand: Direct
Name: ttuD [H]
Synonym: Rru_A2464
Alternate gene names: 83593799
Gene position: 2863425-2864690 (Clockwise)
Preceding gene: 83593796
Following gene: 83593800
Centisome position: 65.78
GC content: 70.85
Gene sequence:
>1266_bases ATGACCGAGCCAACCATCTTTCTCCGCGCGCTCTTCGATGCCGCCGTGGCCGCCGCCGCTCCGGCCCTTCTCGTGCCCGC CCACCTTCCCGAGCCGCCCCGCGGACGAACCGTCGTCGTCGGCGCCGGCAAAGGGGCGGCGGCGATGGCCCTGGCCGTGG AAAGCGCCTGGACCGGTCCGCTCGACGGCTTGGTGGTCACCCGCTACGGCCATGGCGTGCCCTGCGCACGGATCAAGGTG GTCGAGGCGGGGCATCCCGTTCCCGATGAGCGCGGCCAATGGGCGGCCCGCGAGATCTTGACCCTGGCCCGGGGATTGAC CGAGGACGACCTGCTGATCTGCCTGATTTCCGGCGGCGGATCGGCCCTGCTCAGCCTGCCGCCCGATACGGTCGGTCTGG CCGACAAGCGCGCCGTCACCACCGCCCTTTTGCGCTGCGGCGCGCCGATCGGCGCCATCAACACCGTGCGCAAGCATCTG TCCACCATCAAGGGCGGCCGCCTAGCCGCCGCCGCCGCGCCCGCCCGGGTGGTCACCCTGATCATTTCCGATGTGCCCGG CGACGACCCGGCAGTGATCGCCTCGGGCCCCACCGTGCCCGATGCGACGACGGCGGGCGATGCCCTGGCCATCCTGGCCG GCTATGGCATCAGCGAGCCGGCTTCGGCTTTGGCCCACCTCAAGACGCCGGCGGCCGAAACCCCCAAGCCCGGCGACGCG GCCTTCGCCCGCACCACCACCCACCTCATCGCCACGCCGCGCATGGCCCTGACCGCCGCCGCCGATTTCGCCCGCGCCGC CGGCATCACCCCGGTAATCCTTGGCGATTCCCTGGAAGGCGAGGCGCGCGACGCGGCGCTGCTGCTTGGACCGATGGCCC TGTCTTGCGCCCTGCACGGCGAACCGGCGGTCCCGCCGTGCGTCTTGCTCTCGGGGGGCGAATTCACTGTTACCCTGCGC GGCGACGGCCGGGGCGGACCCAATGGCGAATTCGCCCTGGCGCTGGCCCGTCGGCTCGACTCCACTCCCCATATCTGGGC CCTGGCCTGCGACACCGACGGCATCGACGGCTCCGAGGACAACGCCGGCGCCCTGATCACCCCCGATACCCTGGCGCGCG CCGCCCGCCTCGGCCTGTCGGCCGAAGCCCATCTCGCCGATAACGACTCCTACGGGTTTTTCCAGGCTCTGGGCGATCTG GTGATGACCGGACCGACCCTGACCAACGTCAATGATTTTCGCGCAATCCTTATTTCAGCGGAGTGA
Upstream 100 bases:
>100_bases GTCCGAGATTAGGACAAGCCATCGGCGAAAAGCCACCCTTTGCCCGGACTCGGGCGTTTTGGCGCTTGAACGGACCGGTT CGCCTTCCCACGTCTGCGCC
Downstream 100 bases:
>100_bases CACACGACATCTCCGCCCCATGATGTTAAAAAATACAACGGTGGCCCCATGCCGCCACATCCCCCCTCCCTAGCTCGGTG ACGCGCCCCGTCACAGGGCC
Product: hydroxypyruvate reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 421; Mature: 420
Protein sequence:
>421_residues MTEPTIFLRALFDAAVAAAAPALLVPAHLPEPPRGRTVVVGAGKGAAAMALAVESAWTGPLDGLVVTRYGHGVPCARIKV VEAGHPVPDERGQWAAREILTLARGLTEDDLLICLISGGGSALLSLPPDTVGLADKRAVTTALLRCGAPIGAINTVRKHL STIKGGRLAAAAAPARVVTLIISDVPGDDPAVIASGPTVPDATTAGDALAILAGYGISEPASALAHLKTPAAETPKPGDA AFARTTTHLIATPRMALTAAADFARAAGITPVILGDSLEGEARDAALLLGPMALSCALHGEPAVPPCVLLSGGEFTVTLR GDGRGGPNGEFALALARRLDSTPHIWALACDTDGIDGSEDNAGALITPDTLARAARLGLSAEAHLADNDSYGFFQALGDL VMTGPTLTNVNDFRAILISAE
Sequences:
>Translated_421_residues MTEPTIFLRALFDAAVAAAAPALLVPAHLPEPPRGRTVVVGAGKGAAAMALAVESAWTGPLDGLVVTRYGHGVPCARIKV VEAGHPVPDERGQWAAREILTLARGLTEDDLLICLISGGGSALLSLPPDTVGLADKRAVTTALLRCGAPIGAINTVRKHL STIKGGRLAAAAAPARVVTLIISDVPGDDPAVIASGPTVPDATTAGDALAILAGYGISEPASALAHLKTPAAETPKPGDA AFARTTTHLIATPRMALTAAADFARAAGITPVILGDSLEGEARDAALLLGPMALSCALHGEPAVPPCVLLSGGEFTVTLR GDGRGGPNGEFALALARRLDSTPHIWALACDTDGIDGSEDNAGALITPDTLARAARLGLSAEAHLADNDSYGFFQALGDL VMTGPTLTNVNDFRAILISAE >Mature_420_residues TEPTIFLRALFDAAVAAAAPALLVPAHLPEPPRGRTVVVGAGKGAAAMALAVESAWTGPLDGLVVTRYGHGVPCARIKVV EAGHPVPDERGQWAAREILTLARGLTEDDLLICLISGGGSALLSLPPDTVGLADKRAVTTALLRCGAPIGAINTVRKHLS TIKGGRLAAAAAPARVVTLIISDVPGDDPAVIASGPTVPDATTAGDALAILAGYGISEPASALAHLKTPAAETPKPGDAA FARTTTHLIATPRMALTAAADFARAAGITPVILGDSLEGEARDAALLLGPMALSCALHGEPAVPPCVLLSGGEFTVTLRG DGRGGPNGEFALALARRLDSTPHIWALACDTDGIDGSEDNAGALITPDTLARAARLGLSAEAHLADNDSYGFFQALGDLV MTGPTLTNVNDFRAILISAE
Specific function: Degrades an unidentified toxic product from the first step of tartrate degradation [H]
COG id: COG2379
COG function: function code G; Putative glycerate kinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI31543063, Length=482, Percent_Identity=35.0622406639004, Blast_Score=187, Evalue=1e-47, Organism=Caenorhabditis elegans, GI193205461, Length=355, Percent_Identity=32.3943661971831, Blast_Score=139, Evalue=2e-33, Organism=Drosophila melanogaster, GI19920578, Length=434, Percent_Identity=32.0276497695853, Blast_Score=137, Evalue=1e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007835 [H]
Pfam domain/function: PF05161 MOFRL [H]
EC number: =1.1.1.81 [H]
Molecular weight: Translated: 42606; Mature: 42475
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEPTIFLRALFDAAVAAAAPALLVPAHLPEPPRGRTVVVGAGKGAAAMALAVESAWTGP CCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCCEEEEEEEHHCCCCC LDGLVVTRYGHGVPCARIKVVEAGHPVPDERGQWAAREILTLARGLTEDDLLICLISGGG CCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCC SALLSLPPDTVGLADKRAVTTALLRCGAPIGAINTVRKHLSTIKGGRLAAAAAPARVVTL CEEEECCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEECCCCCEEEEE IISDVPGDDPAVIASGPTVPDATTAGDALAILAGYGISEPASALAHLKTPAAETPKPGDA EEECCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCC AFARTTTHLIATPRMALTAAADFARAAGITPVILGDSLEGEARDAALLLGPMALSCALHG HHHHHHHHEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECCHHEEEEECC EPAVPPCVLLSGGEFTVTLRGDGRGGPNGEFALALARRLDSTPHIWALACDTDGIDGSED CCCCCCEEEEECCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC NAGALITPDTLARAARLGLSAEAHLADNDSYGFFQALGDLVMTGPTLTNVNDFRAILISA CCCEEECHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEC E C >Mature Secondary Structure TEPTIFLRALFDAAVAAAAPALLVPAHLPEPPRGRTVVVGAGKGAAAMALAVESAWTGP CCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCCEEEEEEEHHCCCCC LDGLVVTRYGHGVPCARIKVVEAGHPVPDERGQWAAREILTLARGLTEDDLLICLISGGG CCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEECCC SALLSLPPDTVGLADKRAVTTALLRCGAPIGAINTVRKHLSTIKGGRLAAAAAPARVVTL CEEEECCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEECCCCCEEEEE IISDVPGDDPAVIASGPTVPDATTAGDALAILAGYGISEPASALAHLKTPAAETPKPGDA EEECCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCC AFARTTTHLIATPRMALTAAADFARAAGITPVILGDSLEGEARDAALLLGPMALSCALHG HHHHHHHHEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECCHHEEEEECC EPAVPPCVLLSGGEFTVTLRGDGRGGPNGEFALALARRLDSTPHIWALACDTDGIDGSED CCCCCCEEEEECCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC NAGALITPDTLARAARLGLSAEAHLADNDSYGFFQALGDLVMTGPTLTNVNDFRAILISA CCCEEECHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEC E C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7592429 [H]