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The map label for this gene is ydhC [H]

Identifier: 83590435

GI number: 83590435

Start: 1631876

End: 1632571

Strand: Reverse

Name: ydhC [H]

Synonym: Moth_1595

Alternate gene names: 83590435

Gene position: 1632571-1631876 (Counterclockwise)

Preceding gene: 83590438

Following gene: 83590434

Centisome position: 62.1

GC content: 58.19

Gene sequence:

>696_bases
ATGGAAAGCCTGCTTGAACCTATCAACCTGGATAGCTATCAACCGGTGCGCCAGGAAGCCTACCAGGCCTTGCGGGAAGC
CATCCTCACGGGTCGCTTGGAGCCCGGTACGCGCCTGGTGGAGCGCAAAATAGCCAGGCAGCTGGGTGTCAGCCGGACAC
CGGTGCGCGAGGCCATTCGCAAGCTGGAACTGGAAGGTCTGGTTGAGCACCATCCCCGGCGGGGGGTGGTGGTCGCCCGG
ATGTCTACCCGGGAAGCCTTTGAAGTCTACAGCATTCGGGCCGTTCTGGAGGGCCTGGCCGCCCGCCTGGCGGCAGAGCA
TATCAACCCCGTCCAGTTGCTCAGGTTAAACGAGATTGTCAGGGCGATGGAACAGGCCTGCGAGGAAGAGAACGAGGAAC
GGTTACAGGAATTGCACCAGGAGTTTAATGAAACAGTATGGACGGCAGCCGAGAGCCCGCGCCTGCACCAGATGATCAAT
AATCTGGCGGATTATATTGTCGGTTTTACCAGGGTGGGGTACAGTGTACCCGGCCGGGTACGGGCGGCAACCAGGGAGCA
CCGGGAACTCGTTGAGGCCCTGGCGCGTGGAGATGGCGAAAAAGCCGAGAAGCTAGCCCGGCAACATATTGAAAATTCCC
GCCATGCCTATTTTGTCCAGGTGGCATTAAGGGATCAAAAAAATACCAACATTTAA

Upstream 100 bases:

>100_bases
TTGTAATTTGGTTAAAAATGTGCTAATTTTATGTTAAGGTATCCCATGTTACCCGGGCGACGGCTTTCTTTACAGCAATA
GACGCGGGAGGGATCATACT

Downstream 100 bases:

>100_bases
CGAAAAAGTTGCGTCCAACCAGCAGGAATTTTGATAGATACGTCGAACAATTTATAACAAGTTAACAAGGTATACCAAAA
ATCCGTTTGTGGAGCAAAAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MESLLEPINLDSYQPVRQEAYQALREAILTGRLEPGTRLVERKIARQLGVSRTPVREAIRKLELEGLVEHHPRRGVVVAR
MSTREAFEVYSIRAVLEGLAARLAAEHINPVQLLRLNEIVRAMEQACEEENEERLQELHQEFNETVWTAAESPRLHQMIN
NLADYIVGFTRVGYSVPGRVRAATREHRELVEALARGDGEKAEKLARQHIENSRHAYFVQVALRDQKNTNI

Sequences:

>Translated_231_residues
MESLLEPINLDSYQPVRQEAYQALREAILTGRLEPGTRLVERKIARQLGVSRTPVREAIRKLELEGLVEHHPRRGVVVAR
MSTREAFEVYSIRAVLEGLAARLAAEHINPVQLLRLNEIVRAMEQACEEENEERLQELHQEFNETVWTAAESPRLHQMIN
NLADYIVGFTRVGYSVPGRVRAATREHRELVEALARGDGEKAEKLARQHIENSRHAYFVQVALRDQKNTNI
>Mature_231_residues
MESLLEPINLDSYQPVRQEAYQALREAILTGRLEPGTRLVERKIARQLGVSRTPVREAIRKLELEGLVEHHPRRGVVVAR
MSTREAFEVYSIRAVLEGLAARLAAEHINPVQLLRLNEIVRAMEQACEEENEERLQELHQEFNETVWTAAESPRLHQMIN
NLADYIVGFTRVGYSVPGRVRAATREHRELVEALARGDGEKAEKLARQHIENSRHAYFVQVALRDQKNTNI

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=202, Percent_Identity=29.2079207920792, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI87081914, Length=185, Percent_Identity=29.1891891891892, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26498; Mature: 26498

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESLLEPINLDSYQPVRQEAYQALREAILTGRLEPGTRLVERKIARQLGVSRTPVREAIR
CCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
KLELEGLVEHHPRRGVVVARMSTREAFEVYSIRAVLEGLAARLAAEHINPVQLLRLNEIV
HHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
RAMEQACEEENEERLQELHQEFNETVWTAAESPRLHQMINNLADYIVGFTRVGYSVPGRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHH
RAATREHRELVEALARGDGEKAEKLARQHIENSRHAYFVQVALRDQKNTNI
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCC
>Mature Secondary Structure
MESLLEPINLDSYQPVRQEAYQALREAILTGRLEPGTRLVERKIARQLGVSRTPVREAIR
CCCHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
KLELEGLVEHHPRRGVVVARMSTREAFEVYSIRAVLEGLAARLAAEHINPVQLLRLNEIV
HHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
RAMEQACEEENEERLQELHQEFNETVWTAAESPRLHQMINNLADYIVGFTRVGYSVPGRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHH
RAATREHRELVEALARGDGEKAEKLARQHIENSRHAYFVQVALRDQKNTNI
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]