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The map label for this gene is nusB

Identifier: 83590364

GI number: 83590364

Start: 1567340

End: 1567777

Strand: Reverse

Name: nusB

Synonym: Moth_1521

Alternate gene names: 83590364

Gene position: 1567777-1567340 (Counterclockwise)

Preceding gene: 83590365

Following gene: 83590363

Centisome position: 59.64

GC content: 55.25

Gene sequence:

>438_bases
TTGCTTAGACGGGCAGCAAGGGCCAAGGCCTTGCAGGCTCTCTTTGCCATTGACGTTGGAGGTACCAGCCCGGATATGGC
CCTGGAACAGGTACTGGAGGAAGGGGAACTACCACCCAGGGCTATGACCTTCACCAGGGAACTGGTAGAGGGAACAATGG
CCAAGCGCGATGCGATCGATGCGATTATCCGTAAATACGCCGTGGGCTGGCGGTTGGAACGCTTGGCGGCGGTAGATCGC
AATATTCTGCGGATGGCATTGTACGAGATGCAGTACCACCGGGAGACACCGGTCCGTGTGGTCATCAATGAGGCCATCGA
ACTGGCCAAAAACTTTAATAACGAAGAAGCTGGCCGCTTCGTCAACGGTCTCCTGGATAACGCCCGCAAGGATCTGGGGC
TGAGTGAGGAAATAGAAAATGGCTATTCTGGGGATTGA

Upstream 100 bases:

>100_bases
GACCCTGGGTTACTTGGTGGGACGCCGCCTTGATGAGGGCCAGGGGTGGCAAGAACTATGGAAACGCTTTTTTGGCGATC
GCTGGTAAGGGGGATGGCAT

Downstream 100 bases:

>100_bases
CACCAGCGCCTATACCTGTTCGGCGGCCGCCGTCAGCCAGGATGGCGAACTATTGGCAGCCCACCGTCGCCTTTTGCCGG
TACCTCCGGGTGAAAGGGGC

Product: NusB antitermination factor

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MLRRAARAKALQALFAIDVGGTSPDMALEQVLEEGELPPRAMTFTRELVEGTMAKRDAIDAIIRKYAVGWRLERLAAVDR
NILRMALYEMQYHRETPVRVVINEAIELAKNFNNEEAGRFVNGLLDNARKDLGLSEEIENGYSGD

Sequences:

>Translated_145_residues
MLRRAARAKALQALFAIDVGGTSPDMALEQVLEEGELPPRAMTFTRELVEGTMAKRDAIDAIIRKYAVGWRLERLAAVDR
NILRMALYEMQYHRETPVRVVINEAIELAKNFNNEEAGRFVNGLLDNARKDLGLSEEIENGYSGD
>Mature_145_residues
MLRRAARAKALQALFAIDVGGTSPDMALEQVLEEGELPPRAMTFTRELVEGTMAKRDAIDAIIRKYAVGWRLERLAAVDR
NILRMALYEMQYHRETPVRVVINEAIELAKNFNNEEAGRFVNGLLDNARKDLGLSEEIENGYSGD

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=119, Percent_Identity=36.1344537815126, Blast_Score=76, Evalue=7e-16,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_MOOTA (Q2RIA9)

Other databases:

- EMBL:   CP000232
- RefSeq:   YP_430373.1
- ProteinModelPortal:   Q2RIA9
- SMR:   Q2RIA9
- STRING:   Q2RIA9
- GeneID:   3831986
- GenomeReviews:   CP000232_GR
- KEGG:   mta:Moth_1521
- NMPDR:   fig|264732.9.peg.1526
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   SHNDIAD
- PhylomeDB:   Q2RIA9
- BioCyc:   MTHE264732:MOTH_1521-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 16322; Mature: 16322

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRRAARAKALQALFAIDVGGTSPDMALEQVLEEGELPPRAMTFTRELVEGTMAKRDAID
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
AIIRKYAVGWRLERLAAVDRNILRMALYEMQYHRETPVRVVINEAIELAKNFNNEEAGRF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHH
VNGLLDNARKDLGLSEEIENGYSGD
HHHHHHHHHHHCCCHHHHCCCCCCC
>Mature Secondary Structure
MLRRAARAKALQALFAIDVGGTSPDMALEQVLEEGELPPRAMTFTRELVEGTMAKRDAID
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
AIIRKYAVGWRLERLAAVDRNILRMALYEMQYHRETPVRVVINEAIELAKNFNNEEAGRF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHH
VNGLLDNARKDLGLSEEIENGYSGD
HHHHHHHHHHHCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA