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The map label for this gene is yjgF [C]

Identifier: 83590338

GI number: 83590338

Start: 1542055

End: 1542456

Strand: Reverse

Name: yjgF [C]

Synonym: Moth_1495

Alternate gene names: 83590338

Gene position: 1542456-1542055 (Counterclockwise)

Preceding gene: 83590339

Following gene: 83590337

Centisome position: 58.68

GC content: 56.72

Gene sequence:

>402_bases
ATGACGGGCAAAAAAGTAGTTGCAACCAATCAGGCTCCGGCAGCCATCGGGCCTTACTCCCAGGCCATTAAGATAGGCAA
CTTGATTTTCACCTCCGGTCAAATACCCCTTGACCCGGCAAGCGGCCGGATCGTCGACGGCGGGGCGGCTGAGCAGACAG
CCAGGGTGATGGCCAATTTGCAGGCCGTCCTGGCTGCCGCCGGGGCCGGCCTGGAGGATATTGTCAAAACTACCGTATAT
ATAAAAGATATGAATGACTTTAGCGCTATCAACGAGGTTTACGGGCGGTACTTTACCAAGGAACCCCCGGCCCGTTCCTG
CGTAGAGGTGGCCCGCTTGCCTAAAGATGTACTGGTGGAGATCGAGGCGGTGGCGGTTGTCGGGAATAATGGAGGCCGGT
AA

Upstream 100 bases:

>100_bases
TTGACGATTAGTTAACCAGCAGGGAAAAATATAGTTACGGCGAATAATTAACCCTGGAACCTGTGAATAAAGATGAGGTT
TTGGAAGGGATTGATGCCAA

Downstream 100 bases:

>100_bases
AATGCTTTTTACCTTTGATCTTCAGACCCAGGCTAAAGAGGCGATGATTGATATTACCCACCTGGCTGCAAAGACGGTAA
AGGAGGCGGGCATCAAAGAG

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MTGKKVVATNQAPAAIGPYSQAIKIGNLIFTSGQIPLDPASGRIVDGGAAEQTARVMANLQAVLAAAGAGLEDIVKTTVY
IKDMNDFSAINEVYGRYFTKEPPARSCVEVARLPKDVLVEIEAVAVVGNNGGR

Sequences:

>Translated_133_residues
MTGKKVVATNQAPAAIGPYSQAIKIGNLIFTSGQIPLDPASGRIVDGGAAEQTARVMANLQAVLAAAGAGLEDIVKTTVY
IKDMNDFSAINEVYGRYFTKEPPARSCVEVARLPKDVLVEIEAVAVVGNNGGR
>Mature_132_residues
TGKKVVATNQAPAAIGPYSQAIKIGNLIFTSGQIPLDPASGRIVDGGAAEQTARVMANLQAVLAAAGAGLEDIVKTTVYI
KDMNDFSAINEVYGRYFTKEPPARSCVEVARLPKDVLVEIEAVAVVGNNGGR

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=125, Percent_Identity=48, Blast_Score=131, Evalue=2e-31,
Organism=Escherichia coli, GI87082396, Length=125, Percent_Identity=54.4, Blast_Score=137, Evalue=3e-34,
Organism=Escherichia coli, GI87082213, Length=126, Percent_Identity=50, Blast_Score=132, Evalue=1e-32,
Organism=Escherichia coli, GI1787245, Length=125, Percent_Identity=25.6, Blast_Score=69, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI71982075, Length=125, Percent_Identity=50.4, Blast_Score=127, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI25148896, Length=125, Percent_Identity=50.4, Blast_Score=127, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI71982068, Length=125, Percent_Identity=50.4, Blast_Score=126, Evalue=3e-30,
Organism=Saccharomyces cerevisiae, GI6322138, Length=123, Percent_Identity=42.2764227642276, Blast_Score=108, Evalue=4e-25,
Organism=Saccharomyces cerevisiae, GI6320899, Length=103, Percent_Identity=43.6893203883495, Blast_Score=99, Evalue=1e-22,
Organism=Drosophila melanogaster, GI19921376, Length=126, Percent_Identity=45.2380952380952, Blast_Score=128, Evalue=1e-30,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13874; Mature: 13743

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGKKVVATNQAPAAIGPYSQAIKIGNLIFTSGQIPLDPASGRIVDGGAAEQTARVMANL
CCCCEEEECCCCCCCCCCHHHHHHHCCEEEECCCCCCCCCCCEEECCCCHHHHHHHHHHH
QAVLAAAGAGLEDIVKTTVYIKDMNDFSAINEVYGRYFTKEPPARSCVEVARLPKDVLVE
HHHHHHHCCCHHHHHHHHHEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHEEE
IEAVAVVGNNGGR
EEEEEEECCCCCC
>Mature Secondary Structure 
TGKKVVATNQAPAAIGPYSQAIKIGNLIFTSGQIPLDPASGRIVDGGAAEQTARVMANL
CCCEEEECCCCCCCCCCHHHHHHHCCEEEECCCCCCCCCCCEEECCCCHHHHHHHHHHH
QAVLAAAGAGLEDIVKTTVYIKDMNDFSAINEVYGRYFTKEPPARSCVEVARLPKDVLVE
HHHHHHHCCCHHHHHHHHHEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHEEE
IEAVAVVGNNGGR
EEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]