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The map label for this gene is mrnC [H]

Identifier: 82750238

GI number: 82750238

Start: 541097

End: 541501

Strand: Direct

Name: mrnC [H]

Synonym: SAB0481

Alternate gene names: 82750238

Gene position: 541097-541501 (Clockwise)

Preceding gene: 82750237

Following gene: 82750239

Centisome position: 19.73

GC content: 31.6

Gene sequence:

>405_bases
GTGGATAATCAACAAGATAATCACATTAAATTATTGAATCCATTGACCTTAGCATATATGGGAGACGCAGTCTTAGATCA
ATATGTACGTACGTATATCGTTTTAAAGCTTAAAAGTAAGCCTAATAAACTACATCAAATGTCTAAAAAATATGTATCTG
CCAAAAGTCAGGCGCAAACGTTAGAATATTTAATGGAGCAAGAATGGTTTACAAACGAAGAAATGGATATTTTAAAGCGA
GGGCGTAACGCGAAAAGTCATACTAAAGCTAAAAACACTGATGTTCAAACATATCGTAAAAGTTCAGCGATAGAAGCAGT
GATAGGTTTTCTTTATTTAGAAAAAAGAGAAGAACGATTAGAGGCATTATTAAATAAAATAATAACAATAGTAAACGAAA
GGTAG

Upstream 100 bases:

>100_bases
AGGAAAAACAAAGATTTTGCACGAGCAGATGAGATTCGAGACATGCTGAAATCACAAAACATTATATTAGAAGACACACC
TCAAGGGGTTAGATTTAAAC

Downstream 100 bases:

>100_bases
TGACAATGTGGAAGATACGGTTATTGTTGGTAGGCATGCTGTTAGAGAAGCGATTATTACTGGGCATCCGATAAATAAGA
TATTGATTCAAGAAGGTATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MDNQQDNHIKLLNPLTLAYMGDAVLDQYVRTYIVLKLKSKPNKLHQMSKKYVSAKSQAQTLEYLMEQEWFTNEEMDILKR
GRNAKSHTKAKNTDVQTYRKSSAIEAVIGFLYLEKREERLEALLNKIITIVNER

Sequences:

>Translated_134_residues
MDNQQDNHIKLLNPLTLAYMGDAVLDQYVRTYIVLKLKSKPNKLHQMSKKYVSAKSQAQTLEYLMEQEWFTNEEMDILKR
GRNAKSHTKAKNTDVQTYRKSSAIEAVIGFLYLEKREERLEALLNKIITIVNER
>Mature_134_residues
MDNQQDNHIKLLNPLTLAYMGDAVLDQYVRTYIVLKLKSKPNKLHQMSKKYVSAKSQAQTLEYLMEQEWFTNEEMDILKR
GRNAKSHTKAKNTDVQTYRKSSAIEAVIGFLYLEKREERLEALLNKIITIVNER

Specific function: Might be an RNase involved in RNA processing [H]

COG id: COG1939

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase III domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000999
- InterPro:   IPR008226 [H]

Pfam domain/function: PF00636 Ribonuclease_3 [H]

EC number: NA

Molecular weight: Translated: 15720; Mature: 15720

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNQQDNHIKLLNPLTLAYMGDAVLDQYVRTYIVLKLKSKPNKLHQMSKKYVSAKSQAQT
CCCCCCCCEEHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LEYLMEQEWFTNEEMDILKRGRNAKSHTKAKNTDVQTYRKSSAIEAVIGFLYLEKREERL
HHHHHHHHCCCCCHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
EALLNKIITIVNER
HHHHHHHHHHHCCC
>Mature Secondary Structure
MDNQQDNHIKLLNPLTLAYMGDAVLDQYVRTYIVLKLKSKPNKLHQMSKKYVSAKSQAQT
CCCCCCCCEEHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
LEYLMEQEWFTNEEMDILKRGRNAKSHTKAKNTDVQTYRKSSAIEAVIGFLYLEKREERL
HHHHHHHHCCCCCHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
EALLNKIITIVNER
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]