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The map label for this gene is pdxS [H]

Identifier: 82750226

GI number: 82750226

Start: 526153

End: 527028

Strand: Direct

Name: pdxS [H]

Synonym: SAB0469

Alternate gene names: 82750226

Gene position: 526153-527028 (Clockwise)

Preceding gene: 82750224

Following gene: 82750227

Centisome position: 19.18

GC content: 39.5

Gene sequence:

>876_bases
TTGGATCAGACAGAGTCAAAAGAGGTATGGCCGAAATGCAAAAAGGCCGGCGTTATCATGGATGTCGTTAATGCTGAGCA
AGCAAGAATTGCGGAAGAAGCAGGTGCGGTAGCAGTCATGGCTTTAGAGCGTGTACCTTCTGATATTAGAGCAGCTGGTG
GCGTTGCACGTATGGCAAACCCTAAAATTGTAGAAGAAGTAATGAATGCTGTTTCAATTCCTGTAATGGCTAAAGCACGT
ATTGGTCATATTACAGAAGCAAGAGTATTAGAAGCTATGGGTGTTGACTATATCGATGAATCAGAAGTATTAACACCAGC
AGATGAGGAATATCACTTAAGAAAAGATCAATTTACAGTGCCATTTGTATGTGGTTGTCGTAATTTAGGTGAAGCTGCAC
GAAGAATCGGTGAAGGTGCTGCTATGTTACGTACTAAAGGTGAACCAGGTACAGGTAATATTGTTGAAGCTGTAAGACAT
ATGAGACAAGTTAATTCTGAAGTTAGTCGATTGACTGTAATGAATGATGATGAGATTATGACTTTTGCGAAAGATATCGG
TGCGCCTTATGAAATTTTAAAACAAATTAAAGACAATGGTCGTTTACCGGTAGTTAACTTTGCAGCTGGTGGCGTTGCGA
CTCCTCAAGATGCTGCTTTAATGATGGAATTAGGTGCCGACGGTGTATTCGTTGGATCAGGTATTTTTAAATCAGAAGAT
CCAGAAAAATTTGCTAAAGCAATTGTTCAAGCAACAACACATTACCAAGACTATGAACTAATTGGAAGATTAGCAAGTGA
ACTTGGCACTGCTATGAAAGGTTTAGATATCAATCAATTATCATTAGAAGAACGTATGCAAGAGCGTGGTTGGTAA

Upstream 100 bases:

>100_bases
CTAATTTTGTATTATTTTGTACCTTTTTAAATATCAGTTTATACATTACAATGAATTTAATCAACTTGAAAAGGGGTTTT
ATATAAAATGAGTAAAATAA

Downstream 100 bases:

>100_bases
GATATGAAAATAGGTGTATTAGCATTACAAGGTGCAGTACGTGAACATATTAGACATATTGAATTAAGTGGTCATGAAGG
TATTGCAGTTAAAAAAGTTG

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MDQTESKEVWPKCKKAGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKAR
IGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRH
MRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFKSED
PEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLEERMQERGW

Sequences:

>Translated_291_residues
MDQTESKEVWPKCKKAGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKAR
IGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRH
MRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFKSED
PEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLEERMQERGW
>Mature_291_residues
MDQTESKEVWPKCKKAGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKAR
IGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRH
MRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFKSED
PEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLEERMQERGW

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring [H]

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=281, Percent_Identity=56.2277580071174, Blast_Score=333, Evalue=2e-92,
Organism=Saccharomyces cerevisiae, GI6323996, Length=284, Percent_Identity=55.9859154929578, Blast_Score=323, Evalue=2e-89,
Organism=Saccharomyces cerevisiae, GI6321049, Length=284, Percent_Identity=55.9859154929578, Blast_Score=323, Evalue=2e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852 [H]

Pfam domain/function: PF01680 SOR_SNZ [H]

EC number: NA

Molecular weight: Translated: 31679; Mature: 31679

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS01235 PDXS_SNZ_1 ; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQTESKEVWPKCKKAGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMAN
CCCCCCHHHHHHHHHCCHHEEHHCCHHHHHHHHHCHHHHHHHHHCCHHHHHHCCHHHCCC
PKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTV
HHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCC
PFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIM
CHHHCCHHHHHHHHHHCCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCHHH
TFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFKSED
HHHHHHCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCEEECCCCCCCCC
PEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLEERMQERGW
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MDQTESKEVWPKCKKAGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMAN
CCCCCCHHHHHHHHHCCHHEEHHCCHHHHHHHHHCHHHHHHHHHCCHHHHHHCCHHHCCC
PKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTV
HHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCC
PFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIM
CHHHCCHHHHHHHHHHCCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCHHH
TFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFKSED
HHHHHHCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCEEECCCCCCCCC
PEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLEERMQERGW
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA