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The map label for this gene is cspA [H]

Identifier: 82703364

GI number: 82703364

Start: 2552228

End: 2552431

Strand: Reverse

Name: cspA [H]

Synonym: Nmul_A2246

Alternate gene names: 82703364

Gene position: 2552431-2552228 (Counterclockwise)

Preceding gene: 82703367

Following gene: 82703362

Centisome position: 80.16

GC content: 42.16

Gene sequence:

>204_bases
ATGGCAACTGGTACAGTAAAATGGTTCAATGATTCAAAGGGTTTTGGCTTCATTACACCCGATGATGGAAGCGAGGATTT
ATTCGCGCACTTCTCCGCAATCAATATGTCCGGATTTAAAACTCTCAAAGAAGGTCAAAAAGTAACGTTTGAGGTTACCC
AGGGTCCGAAGGGCAAGCAAGCATCAAATATTCAGTCTGCTTAA

Upstream 100 bases:

>100_bases
GGCTTCAAGTTCTCTGCAGCACCGGTTACAGCCGTTTTGCGGTCTTGAAACTCAAACAGTGTTCGGGTTTCCGGCCCGGT
TTTATTTATAGGAAGCAATA

Downstream 100 bases:

>100_bases
AGATTTCATGTCGGGGCGTGCGAGCGCGCTGAACAGCATGTGATCCATCACAGAATTATACAAAGCCCCTTGCTGTAAAT
CAGCAAGGGGCTTTTTCTTG

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MATGTVKWFNDSKGFGFITPDDGSEDLFAHFSAINMSGFKTLKEGQKVTFEVTQGPKGKQASNIQSA

Sequences:

>Translated_67_residues
MATGTVKWFNDSKGFGFITPDDGSEDLFAHFSAINMSGFKTLKEGQKVTFEVTQGPKGKQASNIQSA
>Mature_66_residues
ATGTVKWFNDSKGFGFITPDDGSEDLFAHFSAINMSGFKTLKEGQKVTFEVTQGPKGKQASNIQSA

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=68.8524590163934, Blast_Score=94, Evalue=1e-21,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=64.0625, Blast_Score=93, Evalue=4e-21,
Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=64.0625, Blast_Score=89, Evalue=8e-20,
Organism=Escherichia coli, GI1788126, Length=61, Percent_Identity=67.2131147540984, Blast_Score=87, Evalue=2e-19,
Organism=Escherichia coli, GI2367114, Length=62, Percent_Identity=61.2903225806452, Blast_Score=86, Evalue=7e-19,
Organism=Escherichia coli, GI1787839, Length=62, Percent_Identity=61.2903225806452, Blast_Score=83, Evalue=4e-18,
Organism=Escherichia coli, GI1787834, Length=62, Percent_Identity=61.2903225806452, Blast_Score=81, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71983225, Length=56, Percent_Identity=48.2142857142857, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71983217, Length=56, Percent_Identity=48.2142857142857, Blast_Score=65, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24658520, Length=63, Percent_Identity=46.031746031746, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7232; Mature: 7101

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGTVKWFNDSKGFGFITPDDGSEDLFAHFSAINMSGFKTLKEGQKVTFEVTQGPKGKQ
CCCCCEEEECCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCC
ASNIQSA
CCCCCCC
>Mature Secondary Structure 
ATGTVKWFNDSKGFGFITPDDGSEDLFAHFSAINMSGFKTLKEGQKVTFEVTQGPKGKQ
CCCCEEEECCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCC
ASNIQSA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA