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The map label for this gene is rbn [C]

Identifier: 82703272

GI number: 82703272

Start: 2447046

End: 2448011

Strand: Reverse

Name: rbn [C]

Synonym: Nmul_A2153

Alternate gene names: 82703272

Gene position: 2448011-2447046 (Counterclockwise)

Preceding gene: 82703273

Following gene: 82703263

Centisome position: 76.88

GC content: 52.38

Gene sequence:

>966_bases
ATGAATATCAGGGAGATATGGACTCTCGTCAAAGCTTCTTTTTCGTCGTGGGTGGATGACTATGCGCCGAGCATGGGCGC
GGCGTTGGCCTACTATACTCTGTTTTCGATCGCCCCACTTTTGCTGATCGTTATTTCAACTGCAGGACTTATTTTCGGCG
AAGAAGCAGTGCGTGGGGAAATCTTTGGACAATTACGCGACTTGATGGGTGATCAAGGGGCGGCCGCGGTGGAAGGCTTG
CTGGCAAGCGTCAGCAAACCGGAAGAGGGGGCGGCAGGCGCAGTGGTCGGAACAGTTTTGCTCCTGGTCGGTGCGACGAC
GGTATTTGGCGAGTTGCAGAACGCGTTCGACCGTATTTGGCGCGCCCCCGTCAAAGACAAGAACGACAAGAACGGCGGGA
TATGGGAACTCATCAGGACCAGATTGCTATCGTTTGGAATAATCCTGGGAATAGGCTTCCTGATGATGGTATCCCTTGTT
TTCAATGCCGCCGTGTCCGCGTTGGGAAAGTGGTGGGGCGGATTTTTCTCCGGGCTTGAAGTTCTGGTAACGAGCCTGAA
TTTCATATTCAGCTTTGTTTTTACCACCGCTGTTTTCGCGATGCTTTATAAATTTATGCCCAAAGTGAAAATCCAGTGGA
GGGATGTGGGGGCCGGGGCGGTTGTTACGGCGCTGCTCTTTACCATCGGTAAGATTCTGATCGGTCTTTACATTGGAAAA
AGCGCCATCAGTTCCGGATTCGGCGCAGCAGGGTCGCTGGTTGTCGTGTTGGTATGGGTTTACTACTCGGCTCAGATTTT
TTTACTCGGTGCTGAGTTTACCTGGGTATATTCTCATGCTCGAGGATCGCGAAAAAACCAGGAGATTCCGTCCAAAACCC
CCTCTACTATCCCGTCAGCGGCAGGGAAGGTTGGAGCAATGGACGCCTCTCTCCCGGAGAACCATCAGGAACGCGCTTTT
CGATAG

Upstream 100 bases:

>100_bases
ATGAATTCCAGCTTCCGGCTCGCATTTCTGCCTTAACGCCCCATTTGAACAGAAGCGCAGAGGACAGAAAGGGAAGGAAG
GGGAAAAAGAGGAGGACAGA

Downstream 100 bases:

>100_bases
CCTTTTGTCGTATCCGCATCGCTTCCTTTGATACCCCCTTGGGTAAGAGATCGCAATAATTGTGCAGTTTGAGCGACGAT
ATCACTTAGGTCGAATTTTT

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MNIREIWTLVKASFSSWVDDYAPSMGAALAYYTLFSIAPLLLIVISTAGLIFGEEAVRGEIFGQLRDLMGDQGAAAVEGL
LASVSKPEEGAAGAVVGTVLLLVGATTVFGELQNAFDRIWRAPVKDKNDKNGGIWELIRTRLLSFGIILGIGFLMMVSLV
FNAAVSALGKWWGGFFSGLEVLVTSLNFIFSFVFTTAVFAMLYKFMPKVKIQWRDVGAGAVVTALLFTIGKILIGLYIGK
SAISSGFGAAGSLVVVLVWVYYSAQIFLLGAEFTWVYSHARGSRKNQEIPSKTPSTIPSAAGKVGAMDASLPENHQERAF
R

Sequences:

>Translated_321_residues
MNIREIWTLVKASFSSWVDDYAPSMGAALAYYTLFSIAPLLLIVISTAGLIFGEEAVRGEIFGQLRDLMGDQGAAAVEGL
LASVSKPEEGAAGAVVGTVLLLVGATTVFGELQNAFDRIWRAPVKDKNDKNGGIWELIRTRLLSFGIILGIGFLMMVSLV
FNAAVSALGKWWGGFFSGLEVLVTSLNFIFSFVFTTAVFAMLYKFMPKVKIQWRDVGAGAVVTALLFTIGKILIGLYIGK
SAISSGFGAAGSLVVVLVWVYYSAQIFLLGAEFTWVYSHARGSRKNQEIPSKTPSTIPSAAGKVGAMDASLPENHQERAF
R
>Mature_321_residues
MNIREIWTLVKASFSSWVDDYAPSMGAALAYYTLFSIAPLLLIVISTAGLIFGEEAVRGEIFGQLRDLMGDQGAAAVEGL
LASVSKPEEGAAGAVVGTVLLLVGATTVFGELQNAFDRIWRAPVKDKNDKNGGIWELIRTRLLSFGIILGIGFLMMVSLV
FNAAVSALGKWWGGFFSGLEVLVTSLNFIFSFVFTTAVFAMLYKFMPKVKIQWRDVGAGAVVTALLFTIGKILIGLYIGK
SAISSGFGAAGSLVVVLVWVYYSAQIFLLGAEFTWVYSHARGSRKNQEIPSKTPSTIPSAAGKVGAMDASLPENHQERAF
R

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=295, Percent_Identity=26.7796610169492, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 34558; Mature: 34558

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIREIWTLVKASFSSWVDDYAPSMGAALAYYTLFSIAPLLLIVISTAGLIFGEEAVRGE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFGQLRDLMGDQGAAAVEGLLASVSKPEEGAAGAVVGTVLLLVGATTVFGELQNAFDRIW
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAPVKDKNDKNGGIWELIRTRLLSFGIILGIGFLMMVSLVFNAAVSALGKWWGGFFSGLE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLVTSLNFIFSFVFTTAVFAMLYKFMPKVKIQWRDVGAGAVVTALLFTIGKILIGLYIGK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
SAISSGFGAAGSLVVVLVWVYYSAQIFLLGAEFTWVYSHARGSRKNQEIPSKTPSTIPSA
HHHHCCCCCHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
AGKVGAMDASLPENHQERAFR
CCCCCCCCCCCCCCHHHCCCC
>Mature Secondary Structure
MNIREIWTLVKASFSSWVDDYAPSMGAALAYYTLFSIAPLLLIVISTAGLIFGEEAVRGE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFGQLRDLMGDQGAAAVEGLLASVSKPEEGAAGAVVGTVLLLVGATTVFGELQNAFDRIW
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAPVKDKNDKNGGIWELIRTRLLSFGIILGIGFLMMVSLVFNAAVSALGKWWGGFFSGLE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLVTSLNFIFSFVFTTAVFAMLYKFMPKVKIQWRDVGAGAVVTALLFTIGKILIGLYIGK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
SAISSGFGAAGSLVVVLVWVYYSAQIFLLGAEFTWVYSHARGSRKNQEIPSKTPSTIPSA
HHHHCCCCCHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
AGKVGAMDASLPENHQERAFR
CCCCCCCCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA