Click here to switch to the map view.

The map label for this gene is gspD [H]

Identifier: 82703023

GI number: 82703023

Start: 2189733

End: 2192102

Strand: Direct

Name: gspD [H]

Synonym: Nmul_A1902

Alternate gene names: 82703023

Gene position: 2189733-2192102 (Clockwise)

Preceding gene: 82703022

Following gene: 82703024

Centisome position: 68.77

GC content: 56.84

Gene sequence:

>2370_bases
ATGGGCTACAGAGGTAAAATCGTGCGGCATCGCTCGCTATGTGCAGTTTTTTTATGGATGGCAGTGGCAGGCTGGGTTAC
CGAGGCTTGGGCCGTAAATCCCTCTGCCACCCTGCCCGTCGAGGAAATTGGCGTCCCGCCGAGCGTCCTGCCGGAAGCGG
ATTCCCTGCGCGCCAGTAAATCCAGGTCTTCTGCCGGTCAGGATCTCGTTACACTCAATTTCGTCAATGCCGATATTGAA
GGGGTAGTGAAAGCAGTCAGCGAAATTACCCGAAAAAATTTCATGCTCGACCCCCGCGTCAAGGGTACGATCAACATCGT
TTCAGCCAAGCCAGTGCCGAGGTCGTCGGTCTACGAAGTATTCCTGTCGGCACTGCGATTGCATGGATATGCAGTCGTTG
AGGATTACGGCATCATCAGGATCGTTCCGGAAAGTGATGCCAAGCTATACCAGGGCCCGACACTTGGTCCCACGAACAAG
CGGCAGCTCGCGGGCGACCGTATCCAGACACAGGTATTCACGCTGCAGTACGAATCCGCGGTGCAGATGGTGCCGATCCT
GCGTCCGCTGATCGCTCCAAACAACAGTATCACTGCAAATCCCAACAGTAACACCCTGGTTATTACAGACTACGCGAGCA
ATCTCCAACGCCTGGCGAAAATAATTGATTCGGTGGATCAGCCAAGTGGAACCGAGCCTGTCTCGATACCCCTTCAGCAC
GCCTCGGCGATCGATGTCGCGCAAACCGTGAACCGGCTGTTTTCAGAATCGACGCAGTCCCAGGCCGAGGGCGCCGCGGA
CCCCACCCAGCAGCGTTTCACAGTCGTCGCCGACGCCCGCTCGAATACCCTCCTTGCACGCTCCGGAAACCGGGCAGCGC
TTGCGCGTCTGCGCCAGCTGGTAACAGTGCTCGATTCTCCCACCAGCGCTGCCGGCAACATGCACGTCGTCTTTCTCAAG
AATGCCGATGCAGTCAGGCTTGCCGAAACCCTCAGGGCGATCTATCACAACATGGCGTCCCCGGTTTCCTCATCTTCGGG
ACTGAGCCAGGGCACCGGCACAGCTTTTGGAACATCTTCCCTGGGTACATCCACCGGCGGGGGGATGGGTGCCTCGTCAG
GCACCTCAACAGGGGGGTCGATGGGCACTTCCATGCCCGGTTCCAGCCTTGGTGCGGGGACTGTTCCCGCTGCTTCCACC
GTCACCCCGGCTCCGATGCAAACTGGCGCAACTTCCGCCACCCCCGGCATCATTCAGGCGGATGCAGCCACCAACTCGAT
CATTATTACTGCCCCGGATGCTATTTATAATAATTTGCGCGCGGTGGTGGAGAAGCTCGACGTGCGCCGCGTGCAGGTTT
ATATTGAAGCGCTGATTGCCGAAATCACTGCCGACAGAGCCGCGGAATTCGGCATCCAGTGGCAGAATCTGAGCAATGCC
GCGCAAGGTGGCACCCAGGTTTTCGGTGGCACCAACTTCAATGCCGGCACTGCCGGAGGCGGCAGTATCATCTCCACCGC
CCAGAATCCGATAGCGAATGCAGCCTCCGGTCTGACTATCGGCATCATGAATGGCCTTGTCACGGCTATTCCCGGCATCG
GCCCTGTTCTCAACATTCATACGCTCATCCGCGCGCTGGAAACGGATGCCAATGCCAACATTCTTTCCACCCCCACCCTG
CTGACACTGAATAACGAAGAAGCCAGGATCATCATCGGGCAGAACGTTCCGATTCCCACCGGCCAATTCATTCCGCCAGT
AGGAGGCGCCGTTACCTCCCCGTTTCAAACCGTTTCACGCCAGGACGTGGGACTATCATTGAAGATCAAGCCCCTTATCT
CGGAAGGCAATACTGTCCGTGTGCAGATTTTTCAGGAAGTCTCGAGCGTCGTTCCTGGCACGGTCAACGCCACCAACGGG
TTGATTACCAACAAACGCTCGATAGAATCGACAGTGCTGGTTGACGACGGGCAGATTCTCGTGCTCGGCGGTCTGATGCA
GGATTCGGTAAATGACTCGGTTGAAAGAATTCCACTGGTCGGGGCGATTCCGCTGTTCGGACAATTGTTCAGTTACAACA
AGCGCTCACGCAACAAAACCAATCTGATGGTATTCCTGCGGCCGACGCTGATGCGCGCGGGCGACGCCGCCGATCCGCTT
TCTGACGCACAGTACGATCGGGTGCTGGGCGAACAGAAAAAAGTGAGACCCAAGTTTAATCTTGTGCTTCCGGATATGGA
ATCGCCTACTTTGCCGCCGCGTCAACCACCTCCTGTCATCCTTGATGACAGCATCACTCCCGATGATCCCGGAATTTCCA
ATGTTCAAGGCAACTGGGATACCGGGGGAGTGATGGATAATACACCCTGA

Upstream 100 bases:

>100_bases
GCAGCGTCAGAATCCGCCTGCAGACCCTGCTCGTCCGGTGGAGACAGACCTGCCTGTCGAGCTTCACGCGCCGGTCATAA
CTGAGTGATGTCGTCATCTC

Downstream 100 bases:

>100_bases
AACCGGGCCGCAATCATGGCGTCTGACAGGATTCCTTATGTCTTTGTCAAGACAAATGGAGTGGCCGTGACGAGCGTCAC
GAGCGATCACGCAGAGGTGG

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 789; Mature: 788

Protein sequence:

>789_residues
MGYRGKIVRHRSLCAVFLWMAVAGWVTEAWAVNPSATLPVEEIGVPPSVLPEADSLRASKSRSSAGQDLVTLNFVNADIE
GVVKAVSEITRKNFMLDPRVKGTINIVSAKPVPRSSVYEVFLSALRLHGYAVVEDYGIIRIVPESDAKLYQGPTLGPTNK
RQLAGDRIQTQVFTLQYESAVQMVPILRPLIAPNNSITANPNSNTLVITDYASNLQRLAKIIDSVDQPSGTEPVSIPLQH
ASAIDVAQTVNRLFSESTQSQAEGAADPTQQRFTVVADARSNTLLARSGNRAALARLRQLVTVLDSPTSAAGNMHVVFLK
NADAVRLAETLRAIYHNMASPVSSSSGLSQGTGTAFGTSSLGTSTGGGMGASSGTSTGGSMGTSMPGSSLGAGTVPAAST
VTPAPMQTGATSATPGIIQADAATNSIIITAPDAIYNNLRAVVEKLDVRRVQVYIEALIAEITADRAAEFGIQWQNLSNA
AQGGTQVFGGTNFNAGTAGGGSIISTAQNPIANAASGLTIGIMNGLVTAIPGIGPVLNIHTLIRALETDANANILSTPTL
LTLNNEEARIIIGQNVPIPTGQFIPPVGGAVTSPFQTVSRQDVGLSLKIKPLISEGNTVRVQIFQEVSSVVPGTVNATNG
LITNKRSIESTVLVDDGQILVLGGLMQDSVNDSVERIPLVGAIPLFGQLFSYNKRSRNKTNLMVFLRPTLMRAGDAADPL
SDAQYDRVLGEQKKVRPKFNLVLPDMESPTLPPRQPPPVILDDSITPDDPGISNVQGNWDTGGVMDNTP

Sequences:

>Translated_789_residues
MGYRGKIVRHRSLCAVFLWMAVAGWVTEAWAVNPSATLPVEEIGVPPSVLPEADSLRASKSRSSAGQDLVTLNFVNADIE
GVVKAVSEITRKNFMLDPRVKGTINIVSAKPVPRSSVYEVFLSALRLHGYAVVEDYGIIRIVPESDAKLYQGPTLGPTNK
RQLAGDRIQTQVFTLQYESAVQMVPILRPLIAPNNSITANPNSNTLVITDYASNLQRLAKIIDSVDQPSGTEPVSIPLQH
ASAIDVAQTVNRLFSESTQSQAEGAADPTQQRFTVVADARSNTLLARSGNRAALARLRQLVTVLDSPTSAAGNMHVVFLK
NADAVRLAETLRAIYHNMASPVSSSSGLSQGTGTAFGTSSLGTSTGGGMGASSGTSTGGSMGTSMPGSSLGAGTVPAAST
VTPAPMQTGATSATPGIIQADAATNSIIITAPDAIYNNLRAVVEKLDVRRVQVYIEALIAEITADRAAEFGIQWQNLSNA
AQGGTQVFGGTNFNAGTAGGGSIISTAQNPIANAASGLTIGIMNGLVTAIPGIGPVLNIHTLIRALETDANANILSTPTL
LTLNNEEARIIIGQNVPIPTGQFIPPVGGAVTSPFQTVSRQDVGLSLKIKPLISEGNTVRVQIFQEVSSVVPGTVNATNG
LITNKRSIESTVLVDDGQILVLGGLMQDSVNDSVERIPLVGAIPLFGQLFSYNKRSRNKTNLMVFLRPTLMRAGDAADPL
SDAQYDRVLGEQKKVRPKFNLVLPDMESPTLPPRQPPPVILDDSITPDDPGISNVQGNWDTGGVMDNTP
>Mature_788_residues
GYRGKIVRHRSLCAVFLWMAVAGWVTEAWAVNPSATLPVEEIGVPPSVLPEADSLRASKSRSSAGQDLVTLNFVNADIEG
VVKAVSEITRKNFMLDPRVKGTINIVSAKPVPRSSVYEVFLSALRLHGYAVVEDYGIIRIVPESDAKLYQGPTLGPTNKR
QLAGDRIQTQVFTLQYESAVQMVPILRPLIAPNNSITANPNSNTLVITDYASNLQRLAKIIDSVDQPSGTEPVSIPLQHA
SAIDVAQTVNRLFSESTQSQAEGAADPTQQRFTVVADARSNTLLARSGNRAALARLRQLVTVLDSPTSAAGNMHVVFLKN
ADAVRLAETLRAIYHNMASPVSSSSGLSQGTGTAFGTSSLGTSTGGGMGASSGTSTGGSMGTSMPGSSLGAGTVPAASTV
TPAPMQTGATSATPGIIQADAATNSIIITAPDAIYNNLRAVVEKLDVRRVQVYIEALIAEITADRAAEFGIQWQNLSNAA
QGGTQVFGGTNFNAGTAGGGSIISTAQNPIANAASGLTIGIMNGLVTAIPGIGPVLNIHTLIRALETDANANILSTPTLL
TLNNEEARIIIGQNVPIPTGQFIPPVGGAVTSPFQTVSRQDVGLSLKIKPLISEGNTVRVQIFQEVSSVVPGTVNATNGL
ITNKRSIESTVLVDDGQILVLGGLMQDSVNDSVERIPLVGAIPLFGQLFSYNKRSRNKTNLMVFLRPTLMRAGDAADPLS
DAQYDRVLGEQKKVRPKFNLVLPDMESPTLPPRQPPPVILDDSITPDDPGISNVQGNWDTGGVMDNTP

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=674, Percent_Identity=32.0474777448071, Blast_Score=268, Evalue=8e-73,
Organism=Escherichia coli, GI1789793, Length=304, Percent_Identity=25.9868421052632, Blast_Score=86, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 82966; Mature: 82835

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYRGKIVRHRSLCAVFLWMAVAGWVTEAWAVNPSATLPVEEIGVPPSVLPEADSLRASK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHCCCCCCCCCCHHHHHHC
SRSSAGQDLVTLNFVNADIEGVVKAVSEITRKNFMLDPRVKGTINIVSAKPVPRSSVYEV
CCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCEECCCCCCEEEEEECCCCCHHHHHHH
FLSALRLHGYAVVEDYGIIRIVPESDAKLYQGPTLGPTNKRQLAGDRIQTQVFTLQYESA
HHHHHHHCCEEEEECCCEEEEEECCCCCEECCCCCCCCCCHHHCCCCEEEEEEEEEHHHH
VQMVPILRPLIAPNNSITANPNSNTLVITDYASNLQRLAKIIDSVDQPSGTEPVSIPLQH
HHHHHHHHHHHCCCCCEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC
ASAIDVAQTVNRLFSESTQSQAEGAADPTQQRFTVVADARSNTLLARSGNRAALARLRQL
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHH
VTVLDSPTSAAGNMHVVFLKNADAVRLAETLRAIYHNMASPVSSSSGLSQGTGTAFGTSS
HHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
LGTSTGGGMGASSGTSTGGSMGTSMPGSSLGAGTVPAASTVTPAPMQTGATSATPGIIQA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
DAATNSIIITAPDAIYNNLRAVVEKLDVRRVQVYIEALIAEITADRAAEFGIQWQNLSNA
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHH
AQGGTQVFGGTNFNAGTAGGGSIISTAQNPIANAASGLTIGIMNGLVTAIPGIGPVLNIH
HCCCCEEECCCCCCCCCCCCCCCHHCCCCCHHHHHCCCEEHHHHHHHHHCCCCCHHHHHH
TLIRALETDANANILSTPTLLTLNNEEARIIIGQNVPIPTGQFIPPVGGAVTSPFQTVSR
HHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH
QDVGLSLKIKPLISEGNTVRVQIFQEVSSVVPGTVNATNGLITNKRSIESTVLVDDGQIL
CCCCEEEEEEEEECCCCEEEEEEEHHHHHHCCCCCCCCCCEEECCCCCCEEEEEECCCEE
VLGGLMQDSVNDSVERIPLVGAIPLFGQLFSYNKRSRNKTNLMVFLRPTLMRAGDAADPL
EECCHHHHHHCCHHHHCCEEECHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHCCCCCCCC
SDAQYDRVLGEQKKVRPKFNLVLPDMESPTLPPRQPPPVILDDSITPDDPGISNVQGNWD
CHHHHHHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
TGGVMDNTP
CCCCCCCCC
>Mature Secondary Structure 
GYRGKIVRHRSLCAVFLWMAVAGWVTEAWAVNPSATLPVEEIGVPPSVLPEADSLRASK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHCCCCCCCCCCHHHHHHC
SRSSAGQDLVTLNFVNADIEGVVKAVSEITRKNFMLDPRVKGTINIVSAKPVPRSSVYEV
CCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCEECCCCCCEEEEEECCCCCHHHHHHH
FLSALRLHGYAVVEDYGIIRIVPESDAKLYQGPTLGPTNKRQLAGDRIQTQVFTLQYESA
HHHHHHHCCEEEEECCCEEEEEECCCCCEECCCCCCCCCCHHHCCCCEEEEEEEEEHHHH
VQMVPILRPLIAPNNSITANPNSNTLVITDYASNLQRLAKIIDSVDQPSGTEPVSIPLQH
HHHHHHHHHHHCCCCCEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC
ASAIDVAQTVNRLFSESTQSQAEGAADPTQQRFTVVADARSNTLLARSGNRAALARLRQL
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHH
VTVLDSPTSAAGNMHVVFLKNADAVRLAETLRAIYHNMASPVSSSSGLSQGTGTAFGTSS
HHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
LGTSTGGGMGASSGTSTGGSMGTSMPGSSLGAGTVPAASTVTPAPMQTGATSATPGIIQA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
DAATNSIIITAPDAIYNNLRAVVEKLDVRRVQVYIEALIAEITADRAAEFGIQWQNLSNA
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHH
AQGGTQVFGGTNFNAGTAGGGSIISTAQNPIANAASGLTIGIMNGLVTAIPGIGPVLNIH
HCCCCEEECCCCCCCCCCCCCCCHHCCCCCHHHHHCCCEEHHHHHHHHHCCCCCHHHHHH
TLIRALETDANANILSTPTLLTLNNEEARIIIGQNVPIPTGQFIPPVGGAVTSPFQTVSR
HHHHHHHCCCCCCEECCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH
QDVGLSLKIKPLISEGNTVRVQIFQEVSSVVPGTVNATNGLITNKRSIESTVLVDDGQIL
CCCCEEEEEEEEECCCCEEEEEEEHHHHHHCCCCCCCCCCEEECCCCCCEEEEEECCCEE
VLGGLMQDSVNDSVERIPLVGAIPLFGQLFSYNKRSRNKTNLMVFLRPTLMRAGDAADPL
EECCHHHHHHCCHHHHCCEEECHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHCCCCCCCC
SDAQYDRVLGEQKKVRPKFNLVLPDMESPTLPPRQPPPVILDDSITPDDPGISNVQGNWD
CHHHHHHHHCHHHHCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
TGGVMDNTP
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]