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The map label for this gene is yocS [H]

Identifier: 82702759

GI number: 82702759

Start: 1870266

End: 1871288

Strand: Reverse

Name: yocS [H]

Synonym: Nmul_A1633

Alternate gene names: 82702759

Gene position: 1871288-1870266 (Counterclockwise)

Preceding gene: 82702760

Following gene: 82702758

Centisome position: 58.77

GC content: 58.55

Gene sequence:

>1023_bases
TTGATAGCAGCTGTAAGCAGCTATGCCAGGATACCCGGCTCCATGTTGCAGAAGTTGACCCTCCTGTTCCCCTTCTGGAT
GATCCTCTCGGGGCTGCTCGCCTTGTATGCGCCGGAGTCACTGGCTTCGTTCAACCAGGGTCCCCTGATGGTGGTCGTTC
TTGCCTGCATCATGCTGGGCATGGGACTCACGCTATCGGTGGAGGATTTTCGCCGCATCGCGCGGAGCCCGCGCGCGGTA
GCCATCGGCTTCGCCGCGCAGTATTCCATCATGCCTTTGACGGCCTGGACAGTCGCCGAGGCGTTGAGCCTGCCTCCTCA
TTTCGCGGTGGGACTCATCCTGGTGGGGTGCGCTCCGGGTGGTACCGCTTCAAACCTGATCAGCTACATCGCCGGCGCCG
ATGTTGCACTTTCAGTCGTCATGACGGTCTGCTCCACGCTCGCAGCCGTTGTGCTCACACCCTTGCTGACCCAGCTTTTC
GCGGGCGCTCTCGTGCCGGTCGATGCCTGGTTGTTGTTCAAGCAGACCTTTCAAGTCGTGATTATCCCTGTCTTTCTGGG
CGTGCTGCTCAACCGGTGGGCACCTCGCCTGGTCATGCGGGTTCTGCCTGTTGCTCCGCTGCTTTCAGTGGCAGGCGTGG
TTTTTATCTGTACGGTGATATTTGCCGCCAATGCAGAGGCTATTCTTGCCTATAGCGGAGAGCTTATCCTGGCGACTGCG
CTATTGCATGGGGTCGGCTTCCTGTTCGGTTATTGCTTTGCCCGCTTGTTTGGCTGTTACGGTAACAGCGCACGCACGAT
TGCCATCGAGGTGGGGATGCAAAACTCGGGACTTGCCGTCGTGCTGGCCAAACAGGCTTTTCCATTGTTGCCGCTTGCAC
CCGTCGTTGGCGCGGTTTCCGCCGTTATGCATTCGCTATTGGGCAGTGTGCTTGCGGCATTATGGCGCCGAAATCCGGCT
CCAGTTCAGAAAGAGTTCATTTCGCCTGTACCGCAGACAATCTCCGTGCGGCAGGAGGAATAG

Upstream 100 bases:

>100_bases
TTTCTACCCTGCGAAGAATGGCCGGGGAAGCCGGGCTTCGTTCTACCCGGGTGATCAGCCGTCACGCGCAGCATCATACG
CTTCTATTTTCGCGAAACGA

Downstream 100 bases:

>100_bases
TGCTATTTTCGTGACCTGCAGGAAATTGCAGTAATATAGTGCTCATCAAATGCAGACAGAGCGAGCGGAAGGGGCAGTGA
TAGATGGATAGCAGCTTTGT

Product: bile acid:sodium symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MIAAVSSYARIPGSMLQKLTLLFPFWMILSGLLALYAPESLASFNQGPLMVVVLACIMLGMGLTLSVEDFRRIARSPRAV
AIGFAAQYSIMPLTAWTVAEALSLPPHFAVGLILVGCAPGGTASNLISYIAGADVALSVVMTVCSTLAAVVLTPLLTQLF
AGALVPVDAWLLFKQTFQVVIIPVFLGVLLNRWAPRLVMRVLPVAPLLSVAGVVFICTVIFAANAEAILAYSGELILATA
LLHGVGFLFGYCFARLFGCYGNSARTIAIEVGMQNSGLAVVLAKQAFPLLPLAPVVGAVSAVMHSLLGSVLAALWRRNPA
PVQKEFISPVPQTISVRQEE

Sequences:

>Translated_340_residues
MIAAVSSYARIPGSMLQKLTLLFPFWMILSGLLALYAPESLASFNQGPLMVVVLACIMLGMGLTLSVEDFRRIARSPRAV
AIGFAAQYSIMPLTAWTVAEALSLPPHFAVGLILVGCAPGGTASNLISYIAGADVALSVVMTVCSTLAAVVLTPLLTQLF
AGALVPVDAWLLFKQTFQVVIIPVFLGVLLNRWAPRLVMRVLPVAPLLSVAGVVFICTVIFAANAEAILAYSGELILATA
LLHGVGFLFGYCFARLFGCYGNSARTIAIEVGMQNSGLAVVLAKQAFPLLPLAPVVGAVSAVMHSLLGSVLAALWRRNPA
PVQKEFISPVPQTISVRQEE
>Mature_340_residues
MIAAVSSYARIPGSMLQKLTLLFPFWMILSGLLALYAPESLASFNQGPLMVVVLACIMLGMGLTLSVEDFRRIARSPRAV
AIGFAAQYSIMPLTAWTVAEALSLPPHFAVGLILVGCAPGGTASNLISYIAGADVALSVVMTVCSTLAAVVLTPLLTQLF
AGALVPVDAWLLFKQTFQVVIIPVFLGVLLNRWAPRLVMRVLPVAPLLSVAGVVFICTVIFAANAEAILAYSGELILATA
LLHGVGFLFGYCFARLFGCYGNSARTIAIEVGMQNSGLAVVLAKQAFPLLPLAPVVGAVSAVMHSLLGSVLAALWRRNPA
PVQKEFISPVPQTISVRQEE

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506971, Length=253, Percent_Identity=31.2252964426877, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI4506973, Length=268, Percent_Identity=30.5970149253731, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI215422368, Length=228, Percent_Identity=29.8245614035088, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI215422370, Length=228, Percent_Identity=29.8245614035088, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI9790143, Length=228, Percent_Identity=29.8245614035088, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI37537552, Length=244, Percent_Identity=25.4098360655738, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI24308414, Length=244, Percent_Identity=32.7868852459016, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI58219066, Length=240, Percent_Identity=26.25, Blast_Score=76, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI115533076, Length=107, Percent_Identity=35.5140186915888, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI18859699, Length=244, Percent_Identity=30.7377049180328, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 35922; Mature: 35922

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAAVSSYARIPGSMLQKLTLLFPFWMILSGLLALYAPESLASFNQGPLMVVVLACIMLG
CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHC
MGLTLSVEDFRRIARSPRAVAIGFAAQYSIMPLTAWTVAEALSLPPHFAVGLILVGCAPG
CCCEEEHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEECCCC
GTASNLISYIAGADVALSVVMTVCSTLAAVVLTPLLTQLFAGALVPVDAWLLFKQTFQVV
CCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
IIPVFLGVLLNRWAPRLVMRVLPVAPLLSVAGVVFICTVIFAANAEAILAYSGELILATA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
LLHGVGFLFGYCFARLFGCYGNSARTIAIEVGMQNSGLAVVLAKQAFPLLPLAPVVGAVS
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCHHHHHHHHH
AVMHSLLGSVLAALWRRNPAPVQKEFISPVPQTISVRQEE
HHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MIAAVSSYARIPGSMLQKLTLLFPFWMILSGLLALYAPESLASFNQGPLMVVVLACIMLG
CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHC
MGLTLSVEDFRRIARSPRAVAIGFAAQYSIMPLTAWTVAEALSLPPHFAVGLILVGCAPG
CCCEEEHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEECCCC
GTASNLISYIAGADVALSVVMTVCSTLAAVVLTPLLTQLFAGALVPVDAWLLFKQTFQVV
CCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
IIPVFLGVLLNRWAPRLVMRVLPVAPLLSVAGVVFICTVIFAANAEAILAYSGELILATA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
LLHGVGFLFGYCFARLFGCYGNSARTIAIEVGMQNSGLAVVLAKQAFPLLPLAPVVGAVS
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCHHHHHHHHH
AVMHSLLGSVLAALWRRNPAPVQKEFISPVPQTISVRQEE
HHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]