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The map label for this gene is ybiO [H]

Identifier: 82702643

GI number: 82702643

Start: 1730808

End: 1733318

Strand: Reverse

Name: ybiO [H]

Synonym: Nmul_A1514

Alternate gene names: 82702643

Gene position: 1733318-1730808 (Counterclockwise)

Preceding gene: 82702644

Following gene: 82702642

Centisome position: 54.43

GC content: 55.64

Gene sequence:

>2511_bases
ATGTCACTGAACAAAATCCCTGCCTTGGTGGCAGTAATCAGCTTCCTGTTGCCATTTATTTCATTAAGTCAGGCTGAGGC
GGAAGAACAAGCAATCCAATCCCCACTTACTCCCGCTCAAGCCAGGCGGACCTTATCGATTCTTCAGGACGATGCAAAGC
GTGCGGAGCTCGAACAGACGTTAAGGGCAATCGCACAAGCGACGGCGGAAGCGCCACCGGCAAACACGCCAGACGAAGTT
TCCGCGCCCGCTGCAACTTCTGATTCTGACCAATCTCCAGCTGCCGTACAAACCAATGGAGTCTCGTCATCCGGCGCTCC
ACCGGCAGGAGGTGTTCCTATCGAAATCGCCAAGGGCGGCTTGGTCGCTCAGGTATTCGATCTCATCGGCGAGCGGCTGC
ACATCGTCGTGAATCAGTTACGGGCAGCCGTTCAAACGCTTCTCCAAATAAGAACGGTGGGCGATTGGTGGCAGAACAAT
CTGGGTGTACCGGAACGCCGTGCCATTGTCCTGGAGGCATTATTGGAGGTTGCTCTCATACTTGGCGGGGGGCTGTTTAC
CGAATGGGTACTGAGACGAGCCTTGCGGCACCCGCGGCGAATGATTGAGGACCGTGCGGCAGTTCGCCAAAACGCGACTG
AGCGCCAAAAGGACGACGAGGAAAGGGCGAAAGAAAAAGTAGGGTCGGAGAAGGAGGTGAACCAGGCTGCCCCTCATCTT
CAACCCGTAACGAGCATGCATGCTGCCCCTGGCTCTGGCTCTGGCTCTGGCCCTGGTACGGGCAGGGCAACGGCTGTCGA
CAGGCATTGGAGCCTGTTGCGTCGCTTTCCATTTGCTCTGGGTTACTGGTTGCTCGAATTGGTTCCAGTGGGGGGGTTTG
TGGCAGGAGCCACTCTGCTCTTGACTGCTTTCGGCGGAAGATCGTCAATATTCTACACAACCACGCTCCCGCTCATCAGC
GCGTATGCCACTACGCGAATCGCGCTGAGTATCGGTCACCTCATGGCATCGCCGATCGGCCAGCGCTTGCGCCTGATGCA
TATCAGTGACAAGGCAGCCAATTTCCTGAATCTCTGGCTGCGGCGCATTGTTATCGTCGCTGTTTTTGGTACTGCCATTG
CCGATATCGCTCTCGAAACCGGAGCGACCCCCGACACTCATAATGCGCTTTCCAAACTGGTGGCTCTCGTTGTCCATATC
ATGCTGCTGATAATGATTTTTCGCAGCCGCAAGGAAGTGGCAGTCGCGATCCGGGGTTCAGCCGAAAACAGTCAAGCCCT
GGCGGGATTGCGGAGACTGCTGGCTGATAGCTGGCTTTTCGTGGCAACGTTTTTTATCGTTGGCGCCTGGCTGTTGTGGT
CGATGGGAACGGAAAACGGGTTTCAACAGGTGCTCCATATCTTTGCGCTATCAGCCGTGGTTATTATCAGCGCGAGCCTT
GCGTCGATTTTTGTTCTTGGCGCGCTCGACCGCGCCTTCATTGCCGACCGGAAAAACACGCCTGCGCAGCAAGGACAGCA
GTTGTTCGAAGGATCAGCCGAAGCTGGAACAAAAAGCCCCTATCACCTGCTGATACATCGTGCGGTCTCATTGTTGATCG
CTGTTGTTACCGGACTCGTATTGCTTCGCGTTTGGGGAGTGGATACCTTGTCCTGGTTTGAAAGTGGATCAGTTGGCCGG
CGAGTGGCTTCCGCTGTCGTTACAATCACGGTTACCTGTGCTTTGGCACTGGCGGCATGGGAATCATTGAATAGTGCGAT
CTGCCGCCGCATCGATCGCTGGGGGAAGGCTGGCGATATTGCCCGCGCTGCCCGCCTGCGTACCCTCCTGCCTATGCTGC
GCACGACCATGTCCGCTGTCTTTATCATGATAGTGCTGCTTGCAGCACTGGACGAGCTTGGCATTACCATTGCGCCCCTG
TTGGCCGGTGCCAGTATCATCGGAGTCGCATTGGGTTTTGGTTCACAGAAGCTGGTGCAGGATTTCATCACCGGAATTTT
CCTGCTCATGGAAAATGCAATCCAGGTGGGCGACTTCATCACAGTGGCTGATCTTTCAGGATCGGTCGAGCATTTGTCGA
TTCGCACCGTCCGGTTGCGCGCCCCGGACGGGTCATTGCATGTGGTTCCGTTCAGCTCGGTTTCAACCGTCACCAACACC
AATCGCGGTATCGGGAATGCTTCGATCAGGGTTAGCGTGGCCGCTGATTCGGATGTCGGAAAGGTATTTGCTGCTATCAG
GAGTGTGGTGGATGATATGCGAGCTGATCCACATTTCAAGGATCTCATCCTGTCGGAAGCCGATATCTGGGGCGTCGACC
AGATGGATGGGTTCATGATTACCATTCTTGGACAGATACGGACTCTGGATAAAGGCCGATGGCCGGTACAGCGCGGCTTC
AACTTACGGATTCTGGAGCGTTTCCGTGAATCGGACATCCGCTTCGTCAATCCTCAGGAGCGGCAGGTGGTGATGGAGAA
TAACGAAATCCGGGCGAGGAGCGACCCATGA

Upstream 100 bases:

>100_bases
TCAATCGAATTGTTGTTCCTGCCTACTTACTTCAACTGTAACCATAGACGAGCGATGCCGGCCAGACTTGATCGGCCATC
GCAAACAATGTCTTTCTACT

Downstream 100 bases:

>100_bases
GCCATCCAAGCCCCGCATTCAAACCCCGTAAACATTCGATTGCTTCCATTTCAGAACGACTGCATGGAATAAAGAGAACA
GAGGGCTCTTCCAAGGAAGG

Product: mechanosensitive ion channel MscS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 836; Mature: 835

Protein sequence:

>836_residues
MSLNKIPALVAVISFLLPFISLSQAEAEEQAIQSPLTPAQARRTLSILQDDAKRAELEQTLRAIAQATAEAPPANTPDEV
SAPAATSDSDQSPAAVQTNGVSSSGAPPAGGVPIEIAKGGLVAQVFDLIGERLHIVVNQLRAAVQTLLQIRTVGDWWQNN
LGVPERRAIVLEALLEVALILGGGLFTEWVLRRALRHPRRMIEDRAAVRQNATERQKDDEERAKEKVGSEKEVNQAAPHL
QPVTSMHAAPGSGSGSGPGTGRATAVDRHWSLLRRFPFALGYWLLELVPVGGFVAGATLLLTAFGGRSSIFYTTTLPLIS
AYATTRIALSIGHLMASPIGQRLRLMHISDKAANFLNLWLRRIVIVAVFGTAIADIALETGATPDTHNALSKLVALVVHI
MLLIMIFRSRKEVAVAIRGSAENSQALAGLRRLLADSWLFVATFFIVGAWLLWSMGTENGFQQVLHIFALSAVVIISASL
ASIFVLGALDRAFIADRKNTPAQQGQQLFEGSAEAGTKSPYHLLIHRAVSLLIAVVTGLVLLRVWGVDTLSWFESGSVGR
RVASAVVTITVTCALALAAWESLNSAICRRIDRWGKAGDIARAARLRTLLPMLRTTMSAVFIMIVLLAALDELGITIAPL
LAGASIIGVALGFGSQKLVQDFITGIFLLMENAIQVGDFITVADLSGSVEHLSIRTVRLRAPDGSLHVVPFSSVSTVTNT
NRGIGNASIRVSVAADSDVGKVFAAIRSVVDDMRADPHFKDLILSEADIWGVDQMDGFMITILGQIRTLDKGRWPVQRGF
NLRILERFRESDIRFVNPQERQVVMENNEIRARSDP

Sequences:

>Translated_836_residues
MSLNKIPALVAVISFLLPFISLSQAEAEEQAIQSPLTPAQARRTLSILQDDAKRAELEQTLRAIAQATAEAPPANTPDEV
SAPAATSDSDQSPAAVQTNGVSSSGAPPAGGVPIEIAKGGLVAQVFDLIGERLHIVVNQLRAAVQTLLQIRTVGDWWQNN
LGVPERRAIVLEALLEVALILGGGLFTEWVLRRALRHPRRMIEDRAAVRQNATERQKDDEERAKEKVGSEKEVNQAAPHL
QPVTSMHAAPGSGSGSGPGTGRATAVDRHWSLLRRFPFALGYWLLELVPVGGFVAGATLLLTAFGGRSSIFYTTTLPLIS
AYATTRIALSIGHLMASPIGQRLRLMHISDKAANFLNLWLRRIVIVAVFGTAIADIALETGATPDTHNALSKLVALVVHI
MLLIMIFRSRKEVAVAIRGSAENSQALAGLRRLLADSWLFVATFFIVGAWLLWSMGTENGFQQVLHIFALSAVVIISASL
ASIFVLGALDRAFIADRKNTPAQQGQQLFEGSAEAGTKSPYHLLIHRAVSLLIAVVTGLVLLRVWGVDTLSWFESGSVGR
RVASAVVTITVTCALALAAWESLNSAICRRIDRWGKAGDIARAARLRTLLPMLRTTMSAVFIMIVLLAALDELGITIAPL
LAGASIIGVALGFGSQKLVQDFITGIFLLMENAIQVGDFITVADLSGSVEHLSIRTVRLRAPDGSLHVVPFSSVSTVTNT
NRGIGNASIRVSVAADSDVGKVFAAIRSVVDDMRADPHFKDLILSEADIWGVDQMDGFMITILGQIRTLDKGRWPVQRGF
NLRILERFRESDIRFVNPQERQVVMENNEIRARSDP
>Mature_835_residues
SLNKIPALVAVISFLLPFISLSQAEAEEQAIQSPLTPAQARRTLSILQDDAKRAELEQTLRAIAQATAEAPPANTPDEVS
APAATSDSDQSPAAVQTNGVSSSGAPPAGGVPIEIAKGGLVAQVFDLIGERLHIVVNQLRAAVQTLLQIRTVGDWWQNNL
GVPERRAIVLEALLEVALILGGGLFTEWVLRRALRHPRRMIEDRAAVRQNATERQKDDEERAKEKVGSEKEVNQAAPHLQ
PVTSMHAAPGSGSGSGPGTGRATAVDRHWSLLRRFPFALGYWLLELVPVGGFVAGATLLLTAFGGRSSIFYTTTLPLISA
YATTRIALSIGHLMASPIGQRLRLMHISDKAANFLNLWLRRIVIVAVFGTAIADIALETGATPDTHNALSKLVALVVHIM
LLIMIFRSRKEVAVAIRGSAENSQALAGLRRLLADSWLFVATFFIVGAWLLWSMGTENGFQQVLHIFALSAVVIISASLA
SIFVLGALDRAFIADRKNTPAQQGQQLFEGSAEAGTKSPYHLLIHRAVSLLIAVVTGLVLLRVWGVDTLSWFESGSVGRR
VASAVVTITVTCALALAAWESLNSAICRRIDRWGKAGDIARAARLRTLLPMLRTTMSAVFIMIVLLAALDELGITIAPLL
AGASIIGVALGFGSQKLVQDFITGIFLLMENAIQVGDFITVADLSGSVEHLSIRTVRLRAPDGSLHVVPFSSVSTVTNTN
RGIGNASIRVSVAADSDVGKVFAAIRSVVDDMRADPHFKDLILSEADIWGVDQMDGFMITILGQIRTLDKGRWPVQRGFN
LRILERFRESDIRFVNPQERQVVMENNEIRARSDP

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI87081787, Length=526, Percent_Identity=27.5665399239544, Blast_Score=162, Evalue=6e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 90274; Mature: 90142

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLNKIPALVAVISFLLPFISLSQAEAEEQAIQSPLTPAQARRTLSILQDDAKRAELEQT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
LRAIAQATAEAPPANTPDEVSAPAATSDSDQSPAAVQTNGVSSSGAPPAGGVPIEIAKGG
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEECCC
LVAQVFDLIGERLHIVVNQLRAAVQTLLQIRTVGDWWQNNLGVPERRAIVLEALLEVALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
LGGGLFTEWVLRRALRHPRRMIEDRAAVRQNATERQKDDEERAKEKVGSEKEVNQAAPHL
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCCHHHHHHHCCCH
QPVTSMHAAPGSGSGSGPGTGRATAVDRHWSLLRRFPFALGYWLLELVPVGGFVAGATLL
HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
LTAFGGRSSIFYTTTLPLISAYATTRIALSIGHLMASPIGQRLRLMHISDKAANFLNLWL
HHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHH
RRIVIVAVFGTAIADIALETGATPDTHNALSKLVALVVHIMLLIMIFRSRKEVAVAIRGS
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
AENSQALAGLRRLLADSWLFVATFFIVGAWLLWSMGTENGFQQVLHIFALSAVVIISASL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ASIFVLGALDRAFIADRKNTPAQQGQQLFEGSAEAGTKSPYHLLIHRAVSLLIAVVTGLV
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LLRVWGVDTLSWFESGSVGRRVASAVVTITVTCALALAAWESLNSAICRRIDRWGKAGDI
HHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
ARAARLRTLLPMLRTTMSAVFIMIVLLAALDELGITIAPLLAGASIIGVALGFGSQKLVQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHCCCCHHHHH
DFITGIFLLMENAIQVGDFITVADLSGSVEHLSIRTVRLRAPDGSLHVVPFSSVSTVTNT
HHHHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEEEEEECCCCCEEEEECCCHHHHCCC
NRGIGNASIRVSVAADSDVGKVFAAIRSVVDDMRADPHFKDLILSEADIWGVDQMDGFMI
CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCHHH
TILGQIRTLDKGRWPVQRGFNLRILERFRESDIRFVNPQERQVVMENNEIRARSDP
HHHHHHHHHCCCCCCHHCCCCHHHHHHHHHCCCEEECCCCCEEEEECCCCCCCCCC
>Mature Secondary Structure 
SLNKIPALVAVISFLLPFISLSQAEAEEQAIQSPLTPAQARRTLSILQDDAKRAELEQT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
LRAIAQATAEAPPANTPDEVSAPAATSDSDQSPAAVQTNGVSSSGAPPAGGVPIEIAKGG
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEECCC
LVAQVFDLIGERLHIVVNQLRAAVQTLLQIRTVGDWWQNNLGVPERRAIVLEALLEVALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
LGGGLFTEWVLRRALRHPRRMIEDRAAVRQNATERQKDDEERAKEKVGSEKEVNQAAPHL
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCCHHHHHHHCCCH
QPVTSMHAAPGSGSGSGPGTGRATAVDRHWSLLRRFPFALGYWLLELVPVGGFVAGATLL
HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
LTAFGGRSSIFYTTTLPLISAYATTRIALSIGHLMASPIGQRLRLMHISDKAANFLNLWL
HHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHH
RRIVIVAVFGTAIADIALETGATPDTHNALSKLVALVVHIMLLIMIFRSRKEVAVAIRGS
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
AENSQALAGLRRLLADSWLFVATFFIVGAWLLWSMGTENGFQQVLHIFALSAVVIISASL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
ASIFVLGALDRAFIADRKNTPAQQGQQLFEGSAEAGTKSPYHLLIHRAVSLLIAVVTGLV
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LLRVWGVDTLSWFESGSVGRRVASAVVTITVTCALALAAWESLNSAICRRIDRWGKAGDI
HHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
ARAARLRTLLPMLRTTMSAVFIMIVLLAALDELGITIAPLLAGASIIGVALGFGSQKLVQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHCCCCHHHHH
DFITGIFLLMENAIQVGDFITVADLSGSVEHLSIRTVRLRAPDGSLHVVPFSSVSTVTNT
HHHHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEEEEEECCCCCEEEEECCCHHHHCCC
NRGIGNASIRVSVAADSDVGKVFAAIRSVVDDMRADPHFKDLILSEADIWGVDQMDGFMI
CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCHHH
TILGQIRTLDKGRWPVQRGFNLRILERFRESDIRFVNPQERQVVMENNEIRARSDP
HHHHHHHHHCCCCCCHHCCCCHHHHHHHHHCCCEEECCCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]