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The map label for this gene is yidZ

Identifier: 82546024

GI number: 82546024

Start: 3679433

End: 3680392

Strand: Reverse

Name: yidZ

Synonym: SBO_3664

Alternate gene names: 82546024

Gene position: 3680392-3679433 (Counterclockwise)

Preceding gene: 82546025

Following gene: 82546023

Centisome position: 81.43

GC content: 52.19

Gene sequence:

>960_bases
ATGAAGAAATCCATCACCACGCTTGATCTCAATCTGCTGCTCTGTCTGCAACTGCTGATGCAGGAGCGCAGCGTGACCAA
AGCGGCGAAGCGGATGAACGTGACCCCTTCAGCGGTGAGTAAGTCGCTGGCAAAGTTAAGAGCGTGGTTTGACGACCCGC
TCTTTGTGAACTCACCGCTGGGGCTGTCGCCCACACCGCTAATGGTCAGCATGGAGCAAAATCTGGCGGAATGGATGCAA
ATGAGCAATCTGCTGCTGGATAAACCGCACCACCAGACACCGCGCGGCCTGAAGTTTGAGTTGGCGGCGGAATCGCCGCT
GATGATGATCATGCTTAATGCGCTGTCGAAACGGATCTACCAACGTTACCCGCAGGCGACCATCAAACTACGTAACTGGG
ATTACGATTCCTTAGATGCCATTACTCGTGGTGAAGTGGATATTGGTTTTTCCGGTCGCGAAAGCCATCCTCGCTCGCGG
GAGCTGTTAAGCTCGCTACCGTTAGCCATTGATTATGAAGTGCTGTTTAGTGATGTACCCTGCGTCTGGTTACGCAAAGA
TCATCCGGCACTGCATGAAACGTGGAATCTGGACACCTTTTTACGTTATCCGCATATCAGCATTTGCTGGGAACAGAGCG
ACACCTGGGCGCTGGACAATGTGTTACAGGAGCTGGGGCGCGAACGCACGATTGCTATGAGCCTGCCGGAATTTGAGCAG
TCACTGTTTATGGCAGCGCAACCCGACAATCTGCTACTGGCGACCGCGCCGCGCTACTGTCAGTACTACAATCAACTCCA
TCAACTGCCGTTGGTTGCTCTTCCTCTCCCGTTTGACGAAAGCCAGCAAAAAAAGCTGGAAGTTCCTTTTACCCTGCTGT
GGCATAAACGGAACAGTCATAATCCGAAGATCGTCTGGTTACGGGAAACCATTAAAAACCTTTACGCGTCGATGGCATAA

Upstream 100 bases:

>100_bases
ATCGGCGCATGGAATATGCTGATCGGGATTCTGATTGCCTGTAGCATAGTGAGCCTGTTGCTGATTATGTTCGTCGCGCC
TGGACGCCCCGTTGCCGCTC

Downstream 100 bases:

>100_bases
CCGAATCGTATGAAACGCGACCCAATTTCACAATAAAATGTAAAAAAGTTGTAATAAGCTTGTCTGAATCGAACTTTTAG
CCGCTTTAGTCTGTCCATCA

Product: DNA-binding transcriptional regulator YidZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNSPLGLSPTPLMVSMEQNLAEWMQ
MSNLLLDKPHHQTPRGLKFELAAESPLMMIMLNALSKRIYQRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSR
ELLSSLPLAIDYEVLFSDVPCVWLRKDHPALHETWNLDTFLRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPEFEQ
SLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPLPFDESQQKKLEVPFTLLWHKRNSHNPKIVWLRETIKNLYASMA

Sequences:

>Translated_319_residues
MKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNSPLGLSPTPLMVSMEQNLAEWMQ
MSNLLLDKPHHQTPRGLKFELAAESPLMMIMLNALSKRIYQRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSR
ELLSSLPLAIDYEVLFSDVPCVWLRKDHPALHETWNLDTFLRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPEFEQ
SLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPLPFDESQQKKLEVPFTLLWHKRNSHNPKIVWLRETIKNLYASMA
>Mature_319_residues
MKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNSPLGLSPTPLMVSMEQNLAEWMQ
MSNLLLDKPHHQTPRGLKFELAAESPLMMIMLNALSKRIYQRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSR
ELLSSLPLAIDYEVLFSDVPCVWLRKDHPALHETWNLDTFLRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPEFEQ
SLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPLPFDESQQKKLEVPFTLLWHKRNSHNPKIVWLRETIKNLYASMA

Specific function: Involved in anaerobic NO protection

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1790147, Length=319, Percent_Identity=99.0595611285266, Blast_Score=651, Evalue=0.0,
Organism=Escherichia coli, GI87081766, Length=315, Percent_Identity=23.4920634920635, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786820, Length=82, Percent_Identity=42.6829268292683, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87081684, Length=329, Percent_Identity=24.0121580547112, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): YIDZ_ECO24 (A7ZTR6)

Other databases:

- EMBL:   CP000800
- RefSeq:   YP_001465195.1
- ProteinModelPortal:   A7ZTR6
- SMR:   A7ZTR6
- STRING:   A7ZTR6
- EnsemblBacteria:   EBESCT00000022384
- GeneID:   5587986
- GenomeReviews:   CP000800_GR
- KEGG:   ecw:EcE24377A_4220
- eggNOG:   COG0583
- GeneTree:   EBGT00050000008343
- HOGENOM:   HBG682110
- OMA:   MEQDLAD
- ProtClustDB:   PRK10216
- BioCyc:   ECOL331111:ECE24377A_4220-MONOMER
- HAMAP:   MF_01607
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate

EC number: NA

Molecular weight: Translated: 36929; Mature: 36929

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNSPL
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCC
GLSPTPLMVSMEQNLAEWMQMSNLLLDKPHHQTPRGLKFELAAESPLMMIMLNALSKRIY
CCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
QRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSRELLSSLPLAIDYEVLFSDVP
HHCCCCEEEEECCCCCCCCHHCCCCEEECCCCCCCCCHHHHHHHHCCCEEEHHHHHCCCC
CVWLRKDHPALHETWNLDTFLRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPEFEQ
EEEEECCCCCHHHCCCCHHHEECCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCHHHH
SLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPLPFDESQQKKLEVPFTLLWHKRNSH
HHEEECCCCCEEEECCHHHHHHHHHHHCCCEEEEECCCCCCCCCEECCCEEEEEECCCCC
NPKIVWLRETIKNLYASMA
CCEEEEHHHHHHHHHHHCC
>Mature Secondary Structure
MKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWFDDPLFVNSPL
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCC
GLSPTPLMVSMEQNLAEWMQMSNLLLDKPHHQTPRGLKFELAAESPLMMIMLNALSKRIY
CCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
QRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSRELLSSLPLAIDYEVLFSDVP
HHCCCCEEEEECCCCCCCCHHCCCCEEECCCCCCCCCHHHHHHHHCCCEEEHHHHHCCCC
CVWLRKDHPALHETWNLDTFLRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPEFEQ
EEEEECCCCCHHHCCCCHHHEECCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCHHHH
SLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPLPFDESQQKKLEVPFTLLWHKRNSH
HHEEECCCCCEEEECCHHHHHHHHHHHCCCEEEEECCCCCCCCCEECCCEEEEEECCCCC
NPKIVWLRETIKNLYASMA
CCEEEEHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA