Click here to switch to the map view.

The map label for this gene is xylB [H]

Identifier: 82545935

GI number: 82545935

Start: 3577174

End: 3578493

Strand: Reverse

Name: xylB [H]

Synonym: SBO_3572

Alternate gene names: 82545935

Gene position: 3578493-3577174 (Counterclockwise)

Preceding gene: 82545936

Following gene: 82545934

Centisome position: 79.17

GC content: 54.17

Gene sequence:

>1320_bases
ATGTATATCGGGATAGATCTTGGCACCTCGGGCGTAAAAGTTATTTTGCTCAACGAGCAGGGTGAGGTGGTTGCTTCGCA
AACGGAAAAGCTGACCGTTTCGCGCCCGCATCCACTCTGGTCGGAACAAGACCCGGAACAGTGGTGGCAGGCAACTGATC
GCGCAATGAAAGCTCTGGGCGATCAGCATTCTCTGCAGGACGTTAAAGCATTGGGTATTGCCGGCCAGATGCATGGAGCA
ACCTTACTGGATGCTCAACAACGGGTATTGCGCCCTGCCATTTTGTGGAACGACGGGCGCTGTGCGCAAGAGTGCACTTT
GCTGGAAGCGAGAGTTCCGCAATCACGAGTGATTACCGGCAACCTGATGATGCCCGGATTTACTGCGCCTAAATTGCTAT
GGGTTCAGCGGCATGAGCCGGAGATATTCCGTCAAATCGACAAAGTATTATTACCGAAAGATTACTTGCGTCTGCGTATG
ACGGGGGAGTTTGCCAGCGATATGTCTGACGCAGCTGGCACCATGTGGCTGGATGTCGCAAAGCGTGACTGGAGTGACGT
CATGCTGCAGGCTTGCGACTTATCTCGTGACCAGATGCCCGCATTATACGAAGGCAGCGAAATTACTGGTGCTTTGTTAC
CTGAAGTTGCGAAAGCGTGGGGTATGGCGACGGTGCCAGTTGTCGCAGGCGGTGGCGACAATGCAGTTGGTGTGGGAATG
GTTGATGCTAATCAGGCAATGTTATCGCTGGGGACGTCGGGGGTCTATTTTGCTGTCAGCGAAGGGTTCTTAAGCAAGCC
AGAAAGCGCTGTACACAGCTTTTGCCATGCGCTACCGCAGCGTTGGCATTTAATGTCTGTAATGCTGAGTGCAGCATCGT
GTCTGGATTGGGTCGCGAAATTAACCGGCCTGTGCAATGTCCCAGCTTTAATCGCTGCAGCTCAACAGGCTGATGAAAGT
GCCGAGCCAGTTTGGTTTCTGCCTTATCTTTCCGGCGAGCGTACACCACACAATAATCCCCAGGCGAAGGGGGTTTTCTT
TGGTTTGACTCATCAACATGGCCCCAATGAACTGGCGCGAGCAGTGCTGGAAGGCGTGGGTTATGCGCTGGCAGATGGCA
TGGATGTCGTGCATGCCTGCGGCATTAAACCGCAAAGTGTTACGTTGATTGGTGGCGGGGCGCGTAGTGAGTACTGGCGT
CAGATGCTGGCGGATATCAGCGGTCAGCAGCTCGATTACCGTACGGGGGGATGTGGGGCCAGCACTGGGCGCAGCAAGGC
TGGCGCAGATTGCGGCGAATCCAGAGAAATCGCTCATTGA

Upstream 100 bases:

>100_bases
TGGTAAATCATTATCTGTTCGACAAATAACGGCTAACTGTGCAGTCCGTTGGCCCGGTTATCGGTAGCGATACCGGGCAT
TTTTTTAAGGAACGATCGAT

Downstream 100 bases:

>100_bases
GTTGTTGCCGCAGCTACCGTTAGAACAGTCGCATCTACCAGATGCGCAGCGTTATGCCGCTTATCAGCCACGACGTGAAA
CGTTCCGTCGCCTCTATCAG

Product: xylulokinase

Products: NA

Alternate protein names: Xylulokinase [H]

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSLQDVKALGIAGQMHGA
TLLDAQQRVLRPAILWNDGRCAQECTLLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRM
TGEFASDMSDAAGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEVAKAWGMATVPVVAGGGDNAVGVGM
VDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLMSVMLSAASCLDWVAKLTGLCNVPALIAAAQQADES
AEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWR
QMLADISGQQLDYRTGGCGASTGRSKAGADCGESREIAH

Sequences:

>Translated_439_residues
MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSLQDVKALGIAGQMHGA
TLLDAQQRVLRPAILWNDGRCAQECTLLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRM
TGEFASDMSDAAGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEVAKAWGMATVPVVAGGGDNAVGVGM
VDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLMSVMLSAASCLDWVAKLTGLCNVPALIAAAQQADES
AEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWR
QMLADISGQQLDYRTGGCGASTGRSKAGADCGESREIAH
>Mature_439_residues
MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSLQDVKALGIAGQMHGA
TLLDAQQRVLRPAILWNDGRCAQECTLLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRM
TGEFASDMSDAAGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEVAKAWGMATVPVVAGGGDNAVGVGM
VDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLMSVMLSAASCLDWVAKLTGLCNVPALIAAAQQADES
AEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWR
QMLADISGQQLDYRTGGCGASTGRSKAGADCGESREIAH

Specific function: Unknown

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FGGY kinase family [H]

Homologues:

Organism=Homo sapiens, GI164663828, Length=465, Percent_Identity=23.4408602150538, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI164663830, Length=488, Percent_Identity=22.1311475409836, Blast_Score=67, Evalue=5e-11,
Organism=Escherichia coli, GI1789987, Length=420, Percent_Identity=96.9047619047619, Blast_Score=825, Evalue=0.0,
Organism=Escherichia coli, GI1790005, Length=426, Percent_Identity=24.1784037558685, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI1790361, Length=430, Percent_Identity=23.4883720930233, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1789168, Length=421, Percent_Identity=26.3657957244656, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1787789, Length=437, Percent_Identity=25.858123569794, Blast_Score=97, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17535599, Length=442, Percent_Identity=23.9819004524887, Blast_Score=92, Evalue=6e-19,
Organism=Saccharomyces cerevisiae, GI6321633, Length=329, Percent_Identity=22.7963525835866, Blast_Score=70, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24655555, Length=436, Percent_Identity=23.6238532110092, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24655560, Length=436, Percent_Identity=23.6238532110092, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24655570, Length=436, Percent_Identity=23.6238532110092, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24655574, Length=436, Percent_Identity=23.6238532110092, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24655565, Length=436, Percent_Identity=23.6238532110092, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI17864214, Length=450, Percent_Identity=22.2222222222222, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24654573, Length=380, Percent_Identity=22.6315789473684, Blast_Score=81, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018483
- InterPro:   IPR018484
- InterPro:   IPR006000 [H]

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N [H]

EC number: =2.7.1.17 [H]

Molecular weight: Translated: 47434; Mature: 47434

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: PS00933 FGGY_KINASES_1 ; PS00445 FGGY_KINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALG
CEEEEEECCCCEEEEEECCCCCEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHC
DQHSLQDVKALGIAGQMHGATLLDAQQRVLRPAILWNDGRCAQECTLLEARVPQSRVITG
CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHEEECCCCHHHHHHHHHHCCCCCEEEEC
NLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRMTGEFASDMSDAAGTMWLDVA
CEECCCCCCCEEEEEECCCCHHHHHHHHHHCCCHHEEEEECCHHHHHHHHHCCCEEEHHH
KRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEVAKAWGMATVPVVAGGGDNAVGVGM
HCCHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCEEEEE
VDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLMSVMLSAASCLDWVAK
ECCCHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTGLCNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELAR
HHCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCHHHHHH
AVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGCGA
HHHHHCCHHHHCCHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEECCCCCCC
STGRSKAGADCGESREIAH
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALG
CEEEEEECCCCEEEEEECCCCCEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHC
DQHSLQDVKALGIAGQMHGATLLDAQQRVLRPAILWNDGRCAQECTLLEARVPQSRVITG
CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHEEECCCCHHHHHHHHHHCCCCCEEEEC
NLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRMTGEFASDMSDAAGTMWLDVA
CEECCCCCCCEEEEEECCCCHHHHHHHHHHCCCHHEEEEECCHHHHHHHHHCCCEEEHHH
KRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEVAKAWGMATVPVVAGGGDNAVGVGM
HCCHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCEEEEE
VDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLMSVMLSAASCLDWVAK
ECCCHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTGLCNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELAR
HHCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCHHHHHH
AVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGCGA
HHHHHCCHHHHCCHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEECCCCCCC
STGRSKAGADCGESREIAH
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 6320721; 8041620; 9278503 [H]