| Definition | Shigella boydii Sb227, complete genome. |
|---|---|
| Accession | NC_007613 |
| Length | 4,519,823 |
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The map label for this gene is yhjN [H]
Identifier: 82545896
GI number: 82545896
Start: 3535885
End: 3538224
Strand: Reverse
Name: yhjN [H]
Synonym: SBO_3531
Alternate gene names: 82545896
Gene position: 3538224-3535885 (Counterclockwise)
Preceding gene: 161984835
Following gene: 82545895
Centisome position: 78.28
GC content: 54.91
Gene sequence:
>2340_bases ATGAAAAGAAAACTATTCTGGATTTGTGCAGTGGCTATGGGGATGAGTGCGTTCCCCTCTTTCATGACGCAGGCGACGCC AGCAACGCAACCACTGATCAATGCTGAGCCAGCTGTAGCCGCCCAGACGGAACAAAATCCGCAGGTGGGGCAAGTGATGC CGGGCGTGCAGGGCGCTGATGCGCCAGTCGTGGCGCAGAACGGTCCTTCGCGTGATGTGAAGCTGACCTTTGCGCAAATT GCGCCTCCGCCGGGCAGCATGGTGCTACGTGGCATTAACCCGAACGGCAGCATTGAGTTTGGTATGCGCAGCGATGAAGT GGTGACGAAGGCGATGCTCAACCTCGAATACATGCCATCGCCATCGTTACTGCCTGTCCAGTCGCAGTTAAAGGTTTATC TCAATGATGAGCTGATGGGCGTACTGCCAGTGACCAAAGAACAGTTGGGTAAAAAAACGCTGGCGCAAATGCCCATTAAC CCACTGTTTATTACCGACTTCAACCGTGTGCGGCTGGAGTTTGTCGGCCATTATCAGGACGTGTGCGAAAACCCGGCCAG CACCACGCTTTGGCTGGATGTTGGGCGGAGCAGTGGACTGGATCTGACCTATCAGACCCTGAATGTGAAGAATGACCTGT CACACTTCCCGGTGCCATTCTTTGACCCGCGCGATAACCGTACTAACACCTTGCCGATGGTCTTTGCGGGTGCGCCGGAT GTTGGGCTGCAACAAGCATCTGCCATTGTCGCCTCGTGGTTTGGTTCGCGTTCTGGCTGGCGTGGGCAGAACTTCCCGGT GCTCTATAACCAACTGCCGGATCGTAATGCCATTGTCTTTGCAACCAACGACAAACGGCCGGACTTCCTGCGCGATCATC CGGCGGTAAAAGCCCCGGTGATTGAGATGATCAACCATCCGCAGAATCCTTACGTCAAACTGCTGGTGGTGTTTGGTCGT GACGACAAAGACCTGTTGCAGGCAGCGAAAGGTATCGCTCAGGGTAACATTCTGTTCCGTGGTGAAAGCGTGGTAGTGAA TGAAGTGAAACCGCTGCTACCGCGTAAGCCGTACGATGCGCCGAACTGGGTACGTACCGATCGTCCGGTCACATTTGGCG AACTGAAAACCTATGAAGAACAGTTACAATCCAGCGGTCTTGAGCCAGCAGCGATTAACGTTTCGCTAAACCTGCCGCCG GATCTCTACCTGATGCGCAGTACCGGCATTGATATGGATATTAATTACCGCTACACCATGCCGCCGGTGAAAGACAGTTC GCGGATGGATATCAGCCTGAATAACCAGTTCCTGCAATCCTTCAACCTGAGCAGCAAACAGGAGGCGAACCGCCTGCTGC TGCGGATTCCGGTATTACAAGGTTTGCTGGATGGCAAAACAGATGTCTCTATTCCGGCGCTGAAACTGGGCGCGACCAAC CAGCTGCGCTTCGACTTTGAGTATATGAACCCGATGCCGGGCGGTTCGGTGGATAACTGTATTACCTTCCAGCCGGTGCA GAATCATGTGGTGATTGGTGACGACTCCACCATCGACTTCTCGAAGTATTACCACTTCATCCCGATGCCGGATCTACGCG CCTTTGCTAACGCGGGCTTCCCATTCAGCCGGATGGCGGATCTGTCGCAAACCATCACCGTGATGCCGAAAGCGCCTAAC GAAGCACAGATGGAAACGTTGCTGAATACTGTTGGTTTTATCGGCGCACAGACGGGCTTCCCGGCGATTAATCTGACGGT GACCGATGATGGCAGCACCATTCAGGGCAAAGATGCCGACATCATGATCATCGGTGGTATCCCGGACAAACTGAAAGACG ATAAGCAGATCGACCTATTGGTGCAGGCGACCGAAAGCTGGGTGAAAACACCGATGCGCCAGACCCCGTTCCCCGGCATT GTGCCGGACGAGAGCGATCGCGCGGCAGAAACCCGGTCAACGCTGACCTCTTCCGGTGCGATGGCGGCGGTGATTGGCTT CCAGTCGCCGTATAACGACCAGCGCAGCGTGATTGCGCTGTTGGCAGATAGCCCACGCGGTTATGAAATGCTTAACGATG CGGTGAACGATAGCGGCAAACGCGCCACCATGTTCGGTTCGGTCGCGGTGATCCGCGAGTCCGGTATCAACAGCCTACGT GTTGGCGACGTTTATTACGTAGGTCATCTGCCGTGGTTCGAGCGCGTGTGGTATGCGCTGGCAAACCATCCGATTCTGCT GGCGGTGCTGGCGGCTATCAGTGTGATATTGCTGGCATGGGTACTGTGGCGTCTGCTGCGAATTATTAGTCGTCGTCGTC TTAACCCGGATAACGAGTAA
Upstream 100 bases:
>100_bases CTGGTTTCCTGGGTTGTATCGTTTATTCTGCGCCGCCCGGAGCGGAGCGAAACGGCACAACCATCGGATCAGGCTTTGGC TCAACAATGATGATAACGCG
Downstream 100 bases:
>100_bases TTGAAGATGAATGTGTTGCGTAGTGGAATCGTGACGATGCTGTTGTTGGCTGCCTTTAGTGTTCAGGCAGCCTGTACCTG GCCTGCCTGGGAGCAGTTTA
Product: cellulose synthase regulator protein
Products: NA
Alternate protein names: Cellulose synthase regulatory subunit [H]
Number of amino acids: Translated: 779; Mature: 779
Protein sequence:
>779_residues MKRKLFWICAVAMGMSAFPSFMTQATPATQPLINAEPAVAAQTEQNPQVGQVMPGVQGADAPVVAQNGPSRDVKLTFAQI APPPGSMVLRGINPNGSIEFGMRSDEVVTKAMLNLEYMPSPSLLPVQSQLKVYLNDELMGVLPVTKEQLGKKTLAQMPIN PLFITDFNRVRLEFVGHYQDVCENPASTTLWLDVGRSSGLDLTYQTLNVKNDLSHFPVPFFDPRDNRTNTLPMVFAGAPD VGLQQASAIVASWFGSRSGWRGQNFPVLYNQLPDRNAIVFATNDKRPDFLRDHPAVKAPVIEMINHPQNPYVKLLVVFGR DDKDLLQAAKGIAQGNILFRGESVVVNEVKPLLPRKPYDAPNWVRTDRPVTFGELKTYEEQLQSSGLEPAAINVSLNLPP DLYLMRSTGIDMDINYRYTMPPVKDSSRMDISLNNQFLQSFNLSSKQEANRLLLRIPVLQGLLDGKTDVSIPALKLGATN QLRFDFEYMNPMPGGSVDNCITFQPVQNHVVIGDDSTIDFSKYYHFIPMPDLRAFANAGFPFSRMADLSQTITVMPKAPN EAQMETLLNTVGFIGAQTGFPAINLTVTDDGSTIQGKDADIMIIGGIPDKLKDDKQIDLLVQATESWVKTPMRQTPFPGI VPDESDRAAETRSTLTSSGAMAAVIGFQSPYNDQRSVIALLADSPRGYEMLNDAVNDSGKRATMFGSVAVIRESGINSLR VGDVYYVGHLPWFERVWYALANHPILLAVLAAISVILLAWVLWRLLRIISRRRLNPDNE
Sequences:
>Translated_779_residues MKRKLFWICAVAMGMSAFPSFMTQATPATQPLINAEPAVAAQTEQNPQVGQVMPGVQGADAPVVAQNGPSRDVKLTFAQI APPPGSMVLRGINPNGSIEFGMRSDEVVTKAMLNLEYMPSPSLLPVQSQLKVYLNDELMGVLPVTKEQLGKKTLAQMPIN PLFITDFNRVRLEFVGHYQDVCENPASTTLWLDVGRSSGLDLTYQTLNVKNDLSHFPVPFFDPRDNRTNTLPMVFAGAPD VGLQQASAIVASWFGSRSGWRGQNFPVLYNQLPDRNAIVFATNDKRPDFLRDHPAVKAPVIEMINHPQNPYVKLLVVFGR DDKDLLQAAKGIAQGNILFRGESVVVNEVKPLLPRKPYDAPNWVRTDRPVTFGELKTYEEQLQSSGLEPAAINVSLNLPP DLYLMRSTGIDMDINYRYTMPPVKDSSRMDISLNNQFLQSFNLSSKQEANRLLLRIPVLQGLLDGKTDVSIPALKLGATN QLRFDFEYMNPMPGGSVDNCITFQPVQNHVVIGDDSTIDFSKYYHFIPMPDLRAFANAGFPFSRMADLSQTITVMPKAPN EAQMETLLNTVGFIGAQTGFPAINLTVTDDGSTIQGKDADIMIIGGIPDKLKDDKQIDLLVQATESWVKTPMRQTPFPGI VPDESDRAAETRSTLTSSGAMAAVIGFQSPYNDQRSVIALLADSPRGYEMLNDAVNDSGKRATMFGSVAVIRESGINSLR VGDVYYVGHLPWFERVWYALANHPILLAVLAAISVILLAWVLWRLLRIISRRRLNPDNE >Mature_779_residues MKRKLFWICAVAMGMSAFPSFMTQATPATQPLINAEPAVAAQTEQNPQVGQVMPGVQGADAPVVAQNGPSRDVKLTFAQI APPPGSMVLRGINPNGSIEFGMRSDEVVTKAMLNLEYMPSPSLLPVQSQLKVYLNDELMGVLPVTKEQLGKKTLAQMPIN PLFITDFNRVRLEFVGHYQDVCENPASTTLWLDVGRSSGLDLTYQTLNVKNDLSHFPVPFFDPRDNRTNTLPMVFAGAPD VGLQQASAIVASWFGSRSGWRGQNFPVLYNQLPDRNAIVFATNDKRPDFLRDHPAVKAPVIEMINHPQNPYVKLLVVFGR DDKDLLQAAKGIAQGNILFRGESVVVNEVKPLLPRKPYDAPNWVRTDRPVTFGELKTYEEQLQSSGLEPAAINVSLNLPP DLYLMRSTGIDMDINYRYTMPPVKDSSRMDISLNNQFLQSFNLSSKQEANRLLLRIPVLQGLLDGKTDVSIPALKLGATN QLRFDFEYMNPMPGGSVDNCITFQPVQNHVVIGDDSTIDFSKYYHFIPMPDLRAFANAGFPFSRMADLSQTITVMPKAPN EAQMETLLNTVGFIGAQTGFPAINLTVTDDGSTIQGKDADIMIIGGIPDKLKDDKQIDLLVQATESWVKTPMRQTPFPGI VPDESDRAAETRSTLTSSGAMAAVIGFQSPYNDQRSVIALLADSPRGYEMLNDAVNDSGKRATMFGSVAVIRESGINSLR VGDVYYVGHLPWFERVWYALANHPILLAVLAAISVILLAWVLWRLLRIISRRRLNPDNE
Specific function: Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP) [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Single-pass type I membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AcsB/BcsB family [H]
Homologues:
Organism=Escherichia coli, GI1789952, Length=779, Percent_Identity=99.4865211810013, Blast_Score=1586, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003920 - InterPro: IPR018513 [H]
Pfam domain/function: PF03170 BcsB [H]
EC number: NA
Molecular weight: Translated: 86124; Mature: 86124
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRKLFWICAVAMGMSAFPSFMTQATPATQPLINAEPAVAAQTEQNPQVGQVMPGVQGAD CCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCHHHHCCCCCCCC APVVAQNGPSRDVKLTFAQIAPPPGSMVLRGINPNGSIEFGMRSDEVVTKAMLNLEYMPS CCEEECCCCCCCEEEEEEEECCCCCCEEEEECCCCCCEEECCCCHHHHHHHHHCEEECCC PSLLPVQSQLKVYLNDELMGVLPVTKEQLGKKTLAQMPINPLFITDFNRVRLEFVGHYQD CCCCCCCCCEEEEECCCEEEEECCCHHHHCHHHHHHCCCCEEEEECCCEEEEEHHHHHHH VCENPASTTLWLDVGRSSGLDLTYQTLNVKNDLSHFPVPFFDPRDNRTNTLPMVFAGAPD HHCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC VGLQQASAIVASWFGSRSGWRGQNFPVLYNQLPDRNAIVFATNDKRPDFLRDHPAVKAPV CCHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCHHHCCCCCHHHH IEMINHPQNPYVKLLVVFGRDDKDLLQAAKGIAQGNILFRGESVVVNEVKPLLPRKPYDA HHHHCCCCCCEEEEEEEECCCCHHHHHHHHCCCCCCEEEECCEEEEECHHHHCCCCCCCC PNWVRTDRPVTFGELKTYEEQLQSSGLEPAAINVSLNLPPDLYLMRSTGIDMDINYRYTM CCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEEEEC PPVKDSSRMDISLNNQFLQSFNLSSKQEANRLLLRIPVLQGLLDGKTDVSIPALKLGATN CCCCCCCEEEEEECHHHHHHCCCCCHHHHCCEEEEEHHHHHHHCCCCCCCCCEEEECCCC QLRFDFEYMNPMPGGSVDNCITFQPVQNHVVIGDDSTIDFSKYYHFIPMPDLRAFANAGF EEEEEEEECCCCCCCCCCCEEEEEECCCEEEECCCCCEEHHHEEEECCCCHHHHHHCCCC PFSRMADLSQTITVMPKAPNEAQMETLLNTVGFIGAQTGFPAINLTVTDDGSTIQGKDAD CHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEECCCCCC IMIIGGIPDKLKDDKQIDLLVQATESWVKTPMRQTPFPGIVPDESDRAAETRSTLTSSGA EEEECCCCHHHCCCCCEEEEEEHHHHHHHCCHHCCCCCCCCCCCCCHHHHHHHHHHCCCC MAAVIGFQSPYNDQRSVIALLADSPRGYEMLNDAVNDSGKRATMFGSVAVIRESGINSLR EEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEE VGDVYYVGHLPWFERVWYALANHPILLAVLAAISVILLAWVLWRLLRIISRRRLNPDNE ECCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MKRKLFWICAVAMGMSAFPSFMTQATPATQPLINAEPAVAAQTEQNPQVGQVMPGVQGAD CCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCHHHHCCCCCCCC APVVAQNGPSRDVKLTFAQIAPPPGSMVLRGINPNGSIEFGMRSDEVVTKAMLNLEYMPS CCEEECCCCCCCEEEEEEEECCCCCCEEEEECCCCCCEEECCCCHHHHHHHHHCEEECCC PSLLPVQSQLKVYLNDELMGVLPVTKEQLGKKTLAQMPINPLFITDFNRVRLEFVGHYQD CCCCCCCCCEEEEECCCEEEEECCCHHHHCHHHHHHCCCCEEEEECCCEEEEEHHHHHHH VCENPASTTLWLDVGRSSGLDLTYQTLNVKNDLSHFPVPFFDPRDNRTNTLPMVFAGAPD HHCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC VGLQQASAIVASWFGSRSGWRGQNFPVLYNQLPDRNAIVFATNDKRPDFLRDHPAVKAPV CCHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCHHHCCCCCHHHH IEMINHPQNPYVKLLVVFGRDDKDLLQAAKGIAQGNILFRGESVVVNEVKPLLPRKPYDA HHHHCCCCCCEEEEEEEECCCCHHHHHHHHCCCCCCEEEECCEEEEECHHHHCCCCCCCC PNWVRTDRPVTFGELKTYEEQLQSSGLEPAAINVSLNLPPDLYLMRSTGIDMDINYRYTM CCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEEEEC PPVKDSSRMDISLNNQFLQSFNLSSKQEANRLLLRIPVLQGLLDGKTDVSIPALKLGATN CCCCCCCEEEEEECHHHHHHCCCCCHHHHCCEEEEEHHHHHHHCCCCCCCCCEEEECCCC QLRFDFEYMNPMPGGSVDNCITFQPVQNHVVIGDDSTIDFSKYYHFIPMPDLRAFANAGF EEEEEEEECCCCCCCCCCCEEEEEECCCEEEECCCCCEEHHHEEEECCCCHHHHHHCCCC PFSRMADLSQTITVMPKAPNEAQMETLLNTVGFIGAQTGFPAINLTVTDDGSTIQGKDAD CHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEECCCCCC IMIIGGIPDKLKDDKQIDLLVQATESWVKTPMRQTPFPGIVPDESDRAAETRSTLTSSGA EEEECCCCHHHCCCCCEEEEEEHHHHHHHCCHHCCCCCCCCCCCCCHHHHHHHHHHCCCC MAAVIGFQSPYNDQRSVIALLADSPRGYEMLNDAVNDSGKRATMFGSVAVIRESGINSLR EEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEE VGDVYYVGHLPWFERVWYALANHPILLAVLAAISVILLAWVLWRLLRIISRRRLNPDNE ECCEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]