Definition | Shigella boydii Sb227, complete genome. |
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Accession | NC_007613 |
Length | 4,519,823 |
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The map label for this gene is hybE [H]
Identifier: 82545270
GI number: 82545270
Start: 2874507
End: 2874995
Strand: Direct
Name: hybE [H]
Synonym: SBO_2871
Alternate gene names: 82545270
Gene position: 2874507-2874995 (Clockwise)
Preceding gene: 82545269
Following gene: 82545271
Centisome position: 63.6
GC content: 54.4
Gene sequence:
>489_bases ATGACTGAAGAGATAGCAGGTTTCCAGACCTCCCCGAAGGCGCAAGTACAGGCAGCGTTTGAAGAAATTGCCCGGCGTTC GATGCACGATCTCTCTTTTCTGCATCCTTCAATGCCGGTGTATGTTTCTGATTTTACGCTGTTCGAAGGTCAGTGGACGG GGTGTGTGATCACCCCGTGGATGCTGAGTGCAGTTATCTTCCCCGGCCCGGATCAACTCTGGCCGCTGCGCAAAGTGAGT GAAAAAATTGGTCTGCAACTGCCGTATGGCACCATGACCTTTACCGTTGGCGAACTGGACGGTGTTTCGCAATACCTCTC CTGTTCGCTGATGTCACCGCTTTCGCACAGTATGTCGATTGAAGAGGGCCAACGCCTGACGGATGACTGCGCACGAATGA TCCTTTCGCTGCCAGTCACGAATCCGGATGTACCACACGCAGGGCGTCGCGCCCTGCTGTTTGGTCGCAGGAGTGGCGAA AATGCATGA
Upstream 100 bases:
>100_bases TTAACGCCGACGGTTGAAGCAATGATTGAACCTGCGCTTGAGCAGGTTCTGGCTGCGCTGCGCGAATCAGGCGTGGAAGC CATCCCACGGGAGGCGATTC
Downstream 100 bases:
>100_bases GTTGTCGCTTTGCCAGAGCGCCGTTGAAATTATCCAACGGCAGGCGGAGCAGCACGATGTTAAGCGCGTCACCGCCGTGT GGCTGGAAATTGGCGCGCTC
Product: hydrogenase 2-specific chaperone
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 162; Mature: 161
Protein sequence:
>162_residues MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQLWPLRKVS EKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGE NA
Sequences:
>Translated_162_residues MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQLWPLRKVS EKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGE NA >Mature_161_residues TEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPWMLSAVIFPGPDQLWPLRKVSE KIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSIEEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGEN A
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hupJ family [H]
Homologues:
Organism=Escherichia coli, GI1789366, Length=162, Percent_Identity=100, Blast_Score=337, Evalue=3e-94,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17964; Mature: 17833
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 6.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECEEEECCCCCCEEECHH MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI HHHHEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCH EEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGENA HCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCC >Mature Secondary Structure TEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSDFTLFEGQWTGCVITPW CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECEEEECCCCCCEEECHH MLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGVSQYLSCSLMSPLSHSMSI HHHHEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCH EEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGENA HCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]