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The map label for this gene is yfdZ [H]

Identifier: 82544847

GI number: 82544847

Start: 2398986

End: 2400224

Strand: Reverse

Name: yfdZ [H]

Synonym: SBO_2405

Alternate gene names: 82544847

Gene position: 2400224-2398986 (Counterclockwise)

Preceding gene: 82544851

Following gene: 82544845

Centisome position: 53.1

GC content: 55.04

Gene sequence:

>1239_bases
ATGGCTGACACTCGCCCTGAACGTCGCTTTACGCGCATTGATCGTCTCCCGCCCTACGTTTTTAACATCACCGCTGAACT
GAAAATGGCTGCGCGTCGGCGCGGCGAAGATATTATCGATTTCAGCATGGGTAACCCGGACGGTGCGACTCCGCCGCATA
TCGTCGAAAAATTATGTACTGTGGCCCAGCGCCAGGACACGCATGGTTACTCCACTTCACGCGGCATTCCGCGGTTACGT
CGCGCCATTTCCCGCTGGTATCAGGATCGCTACGACGTTGAAATCGACCCGGAATCAGAAGCCATCGTCACTATTGGTTC
GAAAGAGGGCCTGGCGCATCTGATGCTGGCGACGCTGGATCATGGTGACACGGTGCTGGTGCCGAATCCAAGTTACCCGA
TCCATATTTATGGCGCGGTGATTGCCGGGGCGCAGGTACGCTCAGTGCCGCTGGTGGAAGGTGTCGATTTCTTCAACGAA
CTGGAGCGCGCCATTCGTGAAAGTTATCCAAAACCGAAGATGATGATCCTCGGCTTCCCGTCGAATCCAACCGCGCAATG
CGTGGAGCTGGAGTTCTTCGAAAAGGTTGTGGCGCTGGCGAAACGCTACGATGTGCTGGTGGTCCACGACCTGGCCTATG
CCGATATCGTCTACGATGGCTGGAAAGCGCCGTCAATCATGCAGGTACCGGGTGCACGCGATGTGGCAGTCGAGTTCTTT
ACGCTGTCGAAAAGCTACAACATGGCGGGCTGGCGTATCGGCTTTATGGTTGGCAACAAAACGCTGGTCAGCGCCCTGGC
TCGTATTAAAAGCTATCACGATTACGGCACCTTTACGCCGTTGCAGGTGGCGGCGATTGCGGCGCTGGAGGGCGATCAAC
AGTGCGTGCGCGACATTGCCGAACAGTACAAACGCCGCCGTGATGTATTGGTTAAAGGGCTGCATGAAGCGGGCTGGATA
GTTGAAATGCCGAAGGCTTCGATGTATGTCTGGGCGAAAATACCGGAACCGTATGCTGCCATGGGCTCGCTGGTATTTGC
CAAGAAATTGCTTAACGAAGCGAAGGTCTGTGTCTCGCCGGGGATTGGCTTTGGCGACTATGGTGATACGCATGTTCGCT
TTGCACTGATTGAAAACCGCGACCGTATTCGTCAGGCCATCAGAGGGATTAAAGCGATGTTCCGTGCCGACGGTTTACTA
CCCGCCAGCAGCAAACATATTCACGAAAACGCGGAATAA

Upstream 100 bases:

>100_bases
CGCTGGACAGACAGAAATTAATCAGGCTATTTTCAAAACAGCCACCATTGTGGCAGCGTCGCTCGGACGGTCCGGGCGCT
AACGTTAATCTGAGGAAATT

Downstream 100 bases:

>100_bases
ACACCGTCGTCAGAAATGCAAACAGGAGCCTGATGGCTCCTGTTTTTCATTGCACAGTTTGCTTTTAGATCATCAGGGCA
AAAGTACCGGCCCAAACGAT

Product: aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 411

Protein sequence:

>412_residues
MADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMGNPDGATPPHIVEKLCTVAQRQDTHGYSTSRGIPRLR
RAISRWYQDRYDVEIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNE
LERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGARDVAVEFF
TLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWI
VEMPKASMYVWAKIPEPYAAMGSLVFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFRADGLL
PASSKHIHENAE

Sequences:

>Translated_412_residues
MADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMGNPDGATPPHIVEKLCTVAQRQDTHGYSTSRGIPRLR
RAISRWYQDRYDVEIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNE
LERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGARDVAVEFF
TLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWI
VEMPKASMYVWAKIPEPYAAMGSLVFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFRADGLL
PASSKHIHENAE
>Mature_411_residues
ADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMGNPDGATPPHIVEKLCTVAQRQDTHGYSTSRGIPRLRR
AISRWYQDRYDVEIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNEL
ERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGARDVAVEFFT
LSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWIV
EMPKASMYVWAKIPEPYAAMGSLVFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFRADGLLP
ASSKHIHENAE

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI56713254, Length=421, Percent_Identity=25.41567695962, Blast_Score=119, Evalue=6e-27,
Organism=Homo sapiens, GI56713256, Length=421, Percent_Identity=25.41567695962, Blast_Score=118, Evalue=9e-27,
Organism=Homo sapiens, GI95147551, Length=354, Percent_Identity=23.728813559322, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI169881279, Length=354, Percent_Identity=23.728813559322, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI169881281, Length=173, Percent_Identity=23.6994219653179, Blast_Score=71, Evalue=2e-12,
Organism=Escherichia coli, GI1788722, Length=412, Percent_Identity=99.2718446601942, Blast_Score=845, Evalue=0.0,
Organism=Escherichia coli, GI1786816, Length=293, Percent_Identity=25.5972696245734, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1788627, Length=376, Percent_Identity=26.063829787234, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787710, Length=312, Percent_Identity=26.2820512820513, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1788332, Length=255, Percent_Identity=27.0588235294118, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71994472, Length=367, Percent_Identity=24.5231607629428, Blast_Score=116, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71994476, Length=365, Percent_Identity=24.3835616438356, Blast_Score=116, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17567369, Length=398, Percent_Identity=24.3718592964824, Blast_Score=114, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6322401, Length=393, Percent_Identity=21.1195928753181, Blast_Score=86, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6320317, Length=349, Percent_Identity=23.7822349570201, Blast_Score=83, Evalue=6e-17,
Organism=Drosophila melanogaster, GI28573069, Length=340, Percent_Identity=26.7647058823529, Blast_Score=124, Evalue=8e-29,
Organism=Drosophila melanogaster, GI24646114, Length=340, Percent_Identity=26.7647058823529, Blast_Score=124, Evalue=8e-29,
Organism=Drosophila melanogaster, GI28573067, Length=340, Percent_Identity=26.7647058823529, Blast_Score=124, Evalue=8e-29,
Organism=Drosophila melanogaster, GI28573065, Length=340, Percent_Identity=26.7647058823529, Blast_Score=124, Evalue=8e-29,
Organism=Drosophila melanogaster, GI45551451, Length=387, Percent_Identity=25.3229974160207, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24641770, Length=387, Percent_Identity=25.3229974160207, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24641760, Length=387, Percent_Identity=25.3229974160207, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24641768, Length=387, Percent_Identity=25.3229974160207, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24641766, Length=387, Percent_Identity=25.3229974160207, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24641764, Length=387, Percent_Identity=25.3229974160207, Blast_Score=81, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: 2.6.1.- [C]

Molecular weight: Translated: 46200; Mature: 46069

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMGNPDGATPPHIVEKLCT
CCCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHH
VAQRQDTHGYSTSRGIPRLRRAISRWYQDRYDVEIDPESEAIVTIGSKEGLAHLMLATLD
HHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCHHHHHHHEEC
HGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFP
CCCEEEECCCCCCEEEEEEECCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECC
SNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGARDVAVEFF
CCCCHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHEECCCCCCCEEECCCCCHHEEEEE
TLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIA
EECCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHH
EQYKRRRDVLVKGLHEAGWIVEMPKASMYVWAKIPEPYAAMGSLVFAKKLLNEAKVCVSP
HHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEECC
GIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFRADGLLPASSKHIHENAE
CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMGNPDGATPPHIVEKLCT
CCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHH
VAQRQDTHGYSTSRGIPRLRRAISRWYQDRYDVEIDPESEAIVTIGSKEGLAHLMLATLD
HHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCHHHHHHHEEC
HGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFP
CCCEEEECCCCCCEEEEEEECCCCHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECC
SNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGARDVAVEFF
CCCCHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHEECCCCCCCEEECCCCCHHEEEEE
TLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIA
EECCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHH
EQYKRRRDVLVKGLHEAGWIVEMPKASMYVWAKIPEPYAAMGSLVFAKKLLNEAKVCVSP
HHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEECC
GIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFRADGLLPASSKHIHENAE
CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Pyridoxal Phosphate. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]