Definition | Shigella boydii Sb227, complete genome. |
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Accession | NC_007613 |
Length | 4,519,823 |
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The map label for this gene is yfcQ [H]
Identifier: 82544817
GI number: 82544817
Start: 2360908
End: 2361396
Strand: Reverse
Name: yfcQ [H]
Synonym: SBO_2373
Alternate gene names: 82544817
Gene position: 2361396-2360908 (Counterclockwise)
Preceding gene: 82544818
Following gene: 82544816
Centisome position: 52.25
GC content: 54.19
Gene sequence:
>489_bases ATGAAAAAATTCCTGCTCCTTTTACTGTGCGCTGGTTGCGGGGCTGTGCTGGCGGCGGAAGATGACATCACATTCCACGG TACGCTGATGTCGCCGCCCGCCTGTAGCATCAGCGGCGGGCAAACCATCGAAGTGCAATTTCGCGATCTCATTATCGACA GCATTGATGGCAATTATGGTCGTCAGAAAGTGGACTACGAACTGAGCTGCGACTCGGATGTCCGCGATCCCGAGTGGAAT ATGACACTCTCCTGGACGGGGACTGCCACCTCCTACAACGACTCTGCTATTGAGACGGATGTACCGGGCTTCGGAATTGA GCTTCAGCATGACGGTCAGCGTTTTAAGCTCAACGAGCCGCTTTCCATTAACGCCACCGATTTTAGCCAGAAGCCAAAGC TGGAGGCGGTACCGGTCAAAGCGGCTGATGCGGTGCTGACGGACACGACCTTTTCTGCTTACGCAACCTTACGGGTGGAT TACCAATGA
Upstream 100 bases:
>100_bases ACACTCAGCCTCAGCTGAAAGCGGTGCCGGTAAAACAGAGCGGGGTGCAACTGACTCCGTCGGAGTTTAACGCCACGATG ACCATGGTGGTGGATTACCA
Downstream 100 bases:
>100_bases AAACAGCACACATTTATTCACCCGGTTATGCGCTGTTAGCAGGCCTGCTGCTGACCGCCAGCACAGGAGCACAGGCAGTC GACAACAACCTGCATTTTTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 162; Mature: 162
Protein sequence:
>162_residues MKKFLLLLLCAGCGAVLAAEDDITFHGTLMSPPACSISGGQTIEVQFRDLIIDSIDGNYGRQKVDYELSCDSDVRDPEWN MTLSWTGTATSYNDSAIETDVPGFGIELQHDGQRFKLNEPLSINATDFSQKPKLEAVPVKAADAVLTDTTFSAYATLRVD YQ
Sequences:
>Translated_162_residues MKKFLLLLLCAGCGAVLAAEDDITFHGTLMSPPACSISGGQTIEVQFRDLIIDSIDGNYGRQKVDYELSCDSDVRDPEWN MTLSWTGTATSYNDSAIETDVPGFGIELQHDGQRFKLNEPLSINATDFSQKPKLEAVPVKAADAVLTDTTFSAYATLRVD YQ >Mature_162_residues MKKFLLLLLCAGCGAVLAAEDDITFHGTLMSPPACSISGGQTIEVQFRDLIIDSIDGNYGRQKVDYELSCDSDVRDPEWN MTLSWTGTATSYNDSAIETDVPGFGIELQHDGQRFKLNEPLSINATDFSQKPKLEAVPVKAADAVLTDTTFSAYATLRVD YQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788675, Length=162, Percent_Identity=76.5432098765432, Blast_Score=270, Evalue=3e-74, Organism=Escherichia coli, GI1788676, Length=173, Percent_Identity=32.9479768786127, Blast_Score=81, Evalue=4e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008966 - InterPro: IPR000259 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17720; Mature: 17720
Theoretical pI: Translated: 4.13; Mature: 4.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKFLLLLLCAGCGAVLAAEDDITFHGTLMSPPACSISGGQTIEVQFRDLIIDSIDGNYG CHHHHEEHHHHCCCEEEEECCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCCC RQKVDYELSCDSDVRDPEWNMTLSWTGTATSYNDSAIETDVPGFGIELQHDGQRFKLNEP CEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCEECCCCCCEEEEEECCCEEEECCC LSINATDFSQKPKLEAVPVKAADAVLTDTTFSAYATLRVDYQ CEECCCCCCCCCCEEEECCCCCCEEEECCCEEEEEEEEEECC >Mature Secondary Structure MKKFLLLLLCAGCGAVLAAEDDITFHGTLMSPPACSISGGQTIEVQFRDLIIDSIDGNYG CHHHHEEHHHHCCCEEEEECCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCCC RQKVDYELSCDSDVRDPEWNMTLSWTGTATSYNDSAIETDVPGFGIELQHDGQRFKLNEP CEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCEECCCCCCEEEEEECCCEEEECCC LSINATDFSQKPKLEAVPVKAADAVLTDTTFSAYATLRVDYQ CEECCCCCCCCCCEEEECCCCCCEEEECCCEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]