Click here to switch to the map view.

The map label for this gene is yfcD [H]

Identifier: 82544778

GI number: 82544778

Start: 2326764

End: 2327306

Strand: Reverse

Name: yfcD [H]

Synonym: SBO_2334

Alternate gene names: 82544778

Gene position: 2327306-2326764 (Counterclockwise)

Preceding gene: 82544779

Following gene: 82544774

Centisome position: 51.49

GC content: 53.78

Gene sequence:

>543_bases
ATGGAACAGCGTCGTTTGGCAAGTACTGAATGGGTGGATATTGTCAATGAAGAGAACGAAGTCATTGCACAAGCCAGCCG
GGAACAAATGCGGGCACAGTGTCTGCGTCATCGTGCAACTTACATCGTCGTGCATGATGGCATGGGCAAAATTCTGGTCC
AGCGTCGTACCGAGACAAAAGACTTTTTACCCGGCATGTTAGATGCGACCGCAGGCGGTGTGGTTCAGGCCGATGAGCAA
CTGCTGGAATCCGCGCGTCGCGAAGCGGAAGAAGAGTTGGGCATTGCCGGTGTCCCCTTTGCCGAGCACGGGCAGTTCTA
TTTCGAAGATAAAAATTGCCGTGTCTGGGGCGCGTTGTTCAGCTGCGTCTCTCACGGTCCCTTCGCCCTACAGGAAGATG
AAGTCAGTGAAGTTTGCTGGCTGACGCCGGAAGAAATCACCGCACGCTGCGATGAGTTCACTCCAGACTCGCTGAAAGCG
CTGGCGTTGTGGATGAAGCGCAATGCCAAAAATGAAGCCGTAGAGACTGAAACGGCAGAATGA

Upstream 100 bases:

>100_bases
CAATGATCAAAGTATCATTGCGCAGGTCGCGATTAATCCGTAATTTACCCACAACTCAAAATGCGCCGTAAGAGCGCCAG
AAAAAGAAGGTTTCCTGATA

Downstream 100 bases:

>100_bases
AAAAAGAGCCGCAATTGCGGCTCTTAACATTTTTAGTGGTAGCCCATCAACTGAGCGCCGATCACTACGACGCTGGACAT
AATAAACAGCAGTCCAAGTA

Product: regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MEQRRLASTEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQ
LLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKA
LALWMKRNAKNEAVETETAE

Sequences:

>Translated_180_residues
MEQRRLASTEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQ
LLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKA
LALWMKRNAKNEAVETETAE
>Mature_180_residues
MEQRRLASTEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQ
LLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKA
LALWMKRNAKNEAVETETAE

Specific function: Unknown

COG id: COG0494

COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Escherichia coli, GI1788637, Length=180, Percent_Identity=100, Blast_Score=372, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000086
- InterPro:   IPR015797 [H]

Pfam domain/function: PF00293 NUDIX [H]

EC number: 3.6.-.- [C]

Molecular weight: Translated: 20376; Mature: 20376

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQRRLASTEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETK
CCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCH
DFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGALF
HHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCEEEEECCCCCHHHHHH
SCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWMKRNAKNEAVETETAE
HHHCCCCCCCCCCCHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MEQRRLASTEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETK
CCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCH
DFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGALF
HHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCEEEEECCCCCHHHHHH
SCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWMKRNAKNEAVETETAE
HHHCCCCCCCCCCCHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]