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The map label for this gene is ybdD

Identifier: 82543045

GI number: 82543045

Start: 480658

End: 480855

Strand: Direct

Name: ybdD

Synonym: SBO_0460

Alternate gene names: 82543045

Gene position: 480658-480855 (Clockwise)

Preceding gene: 82543044

Following gene: 82543049

Centisome position: 10.63

GC content: 52.53

Gene sequence:

>198_bases
ATGTTTGATTCACTGGCAAAAGCCGGAAAATATTTAGGTCAGGCGGCGAAGCTGATGATTGGTATGCCTGATTACGACAA
CTATGTCGAACATATGCGGGTTAACCATCCCGATCAAACGCCGATGACCTACGAGGAGTTTTTCCGTGAGCGGCAGGACG
CGCGCTACGGTGGAAAAGGCGGCGCGCGCTGCTGCTAA

Upstream 100 bases:

>100_bases
CGAGGGGACTGACCGAGTGCGTTGATAGCATTTGTAGGCCGGATAAAGCGTTCACGCCGCATCCGGCACTCTTTCAGCAA
CATGGTTAGCGGAGGCCAAG

Downstream 100 bases:

>100_bases
ATTTGCACGTCAGGCTTTAAACGATTCCACTTTTTCGAACGCTGCACGCAACGTATCTGGTGTCAGCGTGACTGGCAGGT
AATGAATGGACTCCACCGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 65; Mature: 65

Protein sequence:

>65_residues
MFDSLAKAGKYLGQAAKLMIGMPDYDNYVEHMRVNHPDQTPMTYEEFFRERQDARYGGKGGARCC

Sequences:

>Translated_65_residues
MFDSLAKAGKYLGQAAKLMIGMPDYDNYVEHMRVNHPDQTPMTYEEFFRERQDARYGGKGGARCC
>Mature_65_residues
MFDSLAKAGKYLGQAAKLMIGMPDYDNYVEHMRVNHPDQTPMTYEEFFRERQDARYGGKGGARCC

Specific function: Unknown

COG id: COG2879

COG function: function code S; Uncharacterized small protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjiX

Homologues:

Organism=Escherichia coli, GI87081761, Length=65, Percent_Identity=100, Blast_Score=139, Evalue=3e-35,
Organism=Escherichia coli, GI1790813, Length=67, Percent_Identity=73.134328358209, Blast_Score=105, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YBDD_ECOL6 (P0AAT0)

Other databases:

- EMBL:   AE014075
- RefSeq:   NP_752617.1
- ProteinModelPortal:   P0AAT0
- EnsemblBacteria:   EBESCT00000043779
- GeneID:   1035607
- GenomeReviews:   AE014075_GR
- KEGG:   ecc:c0686
- GeneTree:   EBGT00050000009874
- HOGENOM:   HBG668379
- OMA:   TYVEHMQ
- ProtClustDB:   CLSK893984
- InterPro:   IPR007423

Pfam domain/function: PF04328 DUF466

EC number: NA

Molecular weight: Translated: 7468; Mature: 7468

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
7.7 %Met     (Translated Protein)
10.8 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
7.7 %Met     (Mature Protein)
10.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDSLAKAGKYLGQAAKLMIGMPDYDNYVEHMRVNHPDQTPMTYEEFFRERQDARYGGKG
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC
GARCC
CCCCC
>Mature Secondary Structure
MFDSLAKAGKYLGQAAKLMIGMPDYDNYVEHMRVNHPDQTPMTYEEFFRERQDARYGGKG
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCC
GARCC
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157