Definition | Shigella boydii Sb227, complete genome. |
---|---|
Accession | NC_007613 |
Length | 4,519,823 |
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The map label for this gene is pheP [H]
Identifier: 82543022
GI number: 82543022
Start: 451800
End: 453176
Strand: Direct
Name: pheP [H]
Synonym: SBO_0437
Alternate gene names: 82543022
Gene position: 451800-453176 (Clockwise)
Preceding gene: 82543021
Following gene: 82543030
Centisome position: 10.0
GC content: 52.65
Gene sequence:
>1377_bases GTGAAAAACGCGTCAACCGTATCGGAAGATACTGCGTCAAATCAAGAGCCGACGCTTCATCGCGGATTACATAACCGTCA TATTCAACTGATTGCGCTGGGTGGCGCAATTGGTACTGGTCTGTTTCTTGGCATTGGCCCGGCGATTCAGATGGCGGGTC CGGCTGTATTGCTGGGCTACGGCGTCGCCGGGATCATCGCTTTCCTGATTATGCGCCAGCTCGGCGAGATGGTGGTCGAA GAGCCGGTATCCGGTTCATTTGCCCACTTTGCCTATAAATACTGGGGACCGTTTGCGGGCTTCCTCTCTGGCTGGAACTA CTGGGTAATGTTCGTGCTGGTGGGAATGGCAGAGCTGACCGCTGCGGGCATCTATATGCAGTACTGGTTCCCGGATGTTC CAACGTGGATTTGGGCTGCCGCCTTCTTTATTATCATCAACGCCGTTAACCTGGTGAACGTGCGCTTATATGGCGAAACC GAGTTCTGGTTTGCGTTGATTAAAGTGCTGGCAATCATCGGTATGATCGGCTTTGGCCTGTGGCTGCTGTTTTCTGGTCA CGGCGGCGAGAAAGCCAGTATCGACAACCTCTGGCGCTACGGTGGTTTCTTCGCCACCGGCTGGAATGGGCTGATTTTGT CGCTGGCGGTAATTATGTTCTCCTTCGGCGGTCTGGAGCTGATTGGGATTACTGCCGCTGAAGCGCGCGATCCGGAAAAA AGCATTCCAAAAGCGGTAAATCAGGTGGTGTATCGCATCCTGCTGTTTTACATCTGTTCACTGGTGGTTTTACTGGCGCT CTATCCGTGGGTGGAAGTGAAATCCAACAGTAGCCCGTTTGTGATGATTTTCCATAATCTCGACAGCAACGAGGTAGCTT CTGCGCTGAACTTCGTCATTCTGGTAGCATCGCTGTCAGTGTATAACAGCGGGGTTTACTCTAACAGCCGCATGCTGTTT GGCCTTTCTGTGCAGGGTAATGCGCCGAAGTTTTTGACTCGCGTCAGCCATCGCGGCGTGCCGATTAACTCGCTGATGCT TTCCGGAGCGATCACTTCGCTGGTGGTGTTAATCAACTATCTGCTGCCGCAAAAAGCGTTTGGTCTGCTGATGGCGCTGG TGGTAGCAACGCTGCTGTTGAACTGGATTATGATCTGCCTGGCGCATCTGCGTTTTCGCGCGGCGATGCGACGTCAGGGA CGTGAAACACAGTTTAAGGCGCTGCTTTATCCGTTCGGCAACTATCTTTGCATTGCCTTCCTCGGCATGATTTTGCTGCT GATGTGCACGATGGATGATATGCGCTTGTCAGCGATCCTGCTGCCGGTGTGGATTGTATTCCTGTTTGTGGCATTTAAAA CGCTGCGTCGGAAATAA
Upstream 100 bases:
>100_bases AGCAGGATACCCCGTTTAACCGTGTGGATTGTGTCTTGCGACGATGGGCACTAAATGTTAAAAGGTGCCCCTCAACAAAA AAGACACACAGGGGAAAGGC
Downstream 100 bases:
>100_bases GGCATTCACGCTACATCCGACAAAACGATGTCCGCTCTCATCCATTCGATGAGAGCGGTTTTTTTAATTACTGCTTAAAT GCACCCGCCAGAGAGCGAAT
Product: phenylalanine transporter
Products: Proton [Cytoplasm]; L-phenylalanine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 458; Mature: 458
Protein sequence:
>458_residues MKNASTVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVE EPVSGSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWAAAFFIIINAVNLVNVRLYGET EFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEK SIPKAVNQVVYRILLFYICSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNEVASALNFVILVASLSVYNSGVYSNSRMLF GLSVQGNAPKFLTRVSHRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAMRRQG RETQFKALLYPFGNYLCIAFLGMILLLMCTMDDMRLSAILLPVWIVFLFVAFKTLRRK
Sequences:
>Translated_458_residues MKNASTVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVE EPVSGSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWAAAFFIIINAVNLVNVRLYGET EFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEK SIPKAVNQVVYRILLFYICSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNEVASALNFVILVASLSVYNSGVYSNSRMLF GLSVQGNAPKFLTRVSHRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAMRRQG RETQFKALLYPFGNYLCIAFLGMILLLMCTMDDMRLSAILLPVWIVFLFVAFKTLRRK >Mature_458_residues MKNASTVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVE EPVSGSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWAAAFFIIINAVNLVNVRLYGET EFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEK SIPKAVNQVVYRILLFYICSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNEVASALNFVILVASLSVYNSGVYSNSRMLF GLSVQGNAPKFLTRVSHRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAMRRQG RETQFKALLYPFGNYLCIAFLGMILLLMCTMDDMRLSAILLPVWIVFLFVAFKTLRRK
Specific function: Permease that is involved in the transport across the cytoplasmic membrane of phenylalanine [H]
COG id: COG1113
COG function: function code E; Gamma-aminobutyrate permease and related permeases
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily. Amino acid transporter (AAT) (TC 2.A.3.1) family [H]
Homologues:
Organism=Homo sapiens, GI110347453, Length=290, Percent_Identity=27.5862068965517, Blast_Score=79, Evalue=7e-15, Organism=Homo sapiens, GI181337167, Length=402, Percent_Identity=24.8756218905473, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI115648063, Length=460, Percent_Identity=21.9565217391304, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI115648022, Length=460, Percent_Identity=21.9565217391304, Blast_Score=68, Evalue=2e-11, Organism=Escherichia coli, GI1786789, Length=458, Percent_Identity=99.1266375545851, Blast_Score=907, Evalue=0.0, Organism=Escherichia coli, GI1786302, Length=434, Percent_Identity=63.8248847926267, Blast_Score=588, Evalue=1e-169, Organism=Escherichia coli, GI48994972, Length=429, Percent_Identity=43.5897435897436, Blast_Score=363, Evalue=1e-102, Organism=Escherichia coli, GI1786602, Length=452, Percent_Identity=44.4690265486726, Blast_Score=347, Evalue=1e-96, Organism=Escherichia coli, GI1790653, Length=453, Percent_Identity=37.9690949227373, Blast_Score=336, Evalue=2e-93, Organism=Escherichia coli, GI87081915, Length=425, Percent_Identity=36, Blast_Score=295, Evalue=3e-81, Organism=Escherichia coli, GI1789017, Length=431, Percent_Identity=36.8909512761021, Blast_Score=273, Evalue=1e-74, Organism=Escherichia coli, GI1788480, Length=418, Percent_Identity=37.5598086124402, Blast_Score=271, Evalue=5e-74, Organism=Escherichia coli, GI87081708, Length=447, Percent_Identity=34.8993288590604, Blast_Score=264, Evalue=1e-71, Organism=Escherichia coli, GI87081869, Length=175, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=9e-16, Organism=Escherichia coli, GI87082023, Length=359, Percent_Identity=22.5626740947075, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI2367353, Length=370, Percent_Identity=21.3513513513514, Blast_Score=64, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17540018, Length=383, Percent_Identity=23.4986945169713, Blast_Score=73, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17531343, Length=374, Percent_Identity=21.1229946524064, Blast_Score=68, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6320772, Length=442, Percent_Identity=35.5203619909502, Blast_Score=246, Evalue=5e-66, Organism=Saccharomyces cerevisiae, GI6324061, Length=443, Percent_Identity=35.2144469525959, Blast_Score=245, Evalue=1e-65, Organism=Saccharomyces cerevisiae, GI6322892, Length=424, Percent_Identity=35.6132075471698, Blast_Score=214, Evalue=2e-56, Organism=Saccharomyces cerevisiae, GI6324990, Length=441, Percent_Identity=32.1995464852608, Blast_Score=213, Evalue=7e-56, Organism=Saccharomyces cerevisiae, GI6324059, Length=450, Percent_Identity=34, Blast_Score=213, Evalue=7e-56, Organism=Saccharomyces cerevisiae, GI6319824, Length=449, Percent_Identity=31.8485523385301, Blast_Score=209, Evalue=7e-55, Organism=Saccharomyces cerevisiae, GI6321629, Length=416, Percent_Identity=31.9711538461538, Blast_Score=206, Evalue=6e-54, Organism=Saccharomyces cerevisiae, GI6324924, Length=448, Percent_Identity=31.25, Blast_Score=203, Evalue=4e-53, Organism=Saccharomyces cerevisiae, GI6324553, Length=399, Percent_Identity=33.0827067669173, Blast_Score=201, Evalue=2e-52, Organism=Saccharomyces cerevisiae, GI6320717, Length=484, Percent_Identity=27.4793388429752, Blast_Score=193, Evalue=5e-50, Organism=Saccharomyces cerevisiae, GI6321053, Length=439, Percent_Identity=31.4350797266515, Blast_Score=187, Evalue=3e-48, Organism=Saccharomyces cerevisiae, GI6319543, Length=436, Percent_Identity=31.651376146789, Blast_Score=187, Evalue=4e-48, Organism=Saccharomyces cerevisiae, GI6322967, Length=395, Percent_Identity=31.1392405063291, Blast_Score=185, Evalue=1e-47, Organism=Saccharomyces cerevisiae, GI6320251, Length=488, Percent_Identity=27.8688524590164, Blast_Score=183, Evalue=5e-47, Organism=Saccharomyces cerevisiae, GI6319542, Length=480, Percent_Identity=26.4583333333333, Blast_Score=173, Evalue=6e-44, Organism=Saccharomyces cerevisiae, GI6324981, Length=416, Percent_Identity=32.4519230769231, Blast_Score=171, Evalue=2e-43, Organism=Saccharomyces cerevisiae, GI6319608, Length=413, Percent_Identity=29.5399515738499, Blast_Score=164, Evalue=2e-41, Organism=Saccharomyces cerevisiae, GI6320364, Length=487, Percent_Identity=27.3100616016427, Blast_Score=132, Evalue=1e-31, Organism=Drosophila melanogaster, GI24666159, Length=426, Percent_Identity=22.7699530516432, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI221512776, Length=426, Percent_Identity=22.7699530516432, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI161077963, Length=416, Percent_Identity=22.3557692307692, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI24667468, Length=427, Percent_Identity=22.7166276346604, Blast_Score=70, Evalue=4e-12, Organism=Drosophila melanogaster, GI221331183, Length=351, Percent_Identity=23.6467236467236, Blast_Score=67, Evalue=3e-11, Organism=Drosophila melanogaster, GI17647653, Length=351, Percent_Identity=23.6467236467236, Blast_Score=67, Evalue=3e-11, Organism=Drosophila melanogaster, GI24664379, Length=351, Percent_Identity=23.6467236467236, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004841 - InterPro: IPR002293 - InterPro: IPR004840 [H]
Pfam domain/function: PF00324 AA_permease [H]
EC number: NA
Molecular weight: Translated: 50703; Mature: 50703
Theoretical pI: Translated: 9.46; Mature: 9.46
Prosite motif: PS00218 AMINO_ACID_PERMEASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNASTVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGY CCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEEECCHHHHHHHHHCCHHHHHCCCHHHHHH GVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELT HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH AAGIYMQYWFPDVPTWIWAAAFFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGL HHHHHHEECCCCCHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHH WLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEK HHHCCCCCCCCCCHHHHHHHCCEEECCHHHHHHHHHHHHHHCCCEEEEEEEHHCCCCCHH SIPKAVNQVVYRILLFYICSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNEVASALNFVI HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCHHHHHHHHHHH LVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRVSHRGVPINSLMLSGAITSLVVLINY HHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH LLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAMRRQGRETQFKALLYPFGNYLCIAF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH LGMILLLMCTMDDMRLSAILLPVWIVFLFVAFKTLRRK HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKNASTVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGY CCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEEECCHHHHHHHHHCCHHHHHCCCHHHHHH GVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELT HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH AAGIYMQYWFPDVPTWIWAAAFFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGL HHHHHHEECCCCCHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHH WLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEK HHHCCCCCCCCCCHHHHHHHCCEEECCHHHHHHHHHHHHHHCCCEEEEEEEHHCCCCCHH SIPKAVNQVVYRILLFYICSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNEVASALNFVI HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCHHHHHHHHHHH LVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRVSHRGVPINSLMLSGAITSLVVLINY HHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH LLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAMRRQGRETQFKALLYPFGNYLCIAF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH LGMILLLMCTMDDMRLSAILLPVWIVFLFVAFKTLRRK HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; L-phenylalanine [Periplasm] [C]
Specific reaction: Proton [Periplasm] + L-phenylalanine [Periplasm] = Proton [Cytoplasm] + L-phenylalanine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1711024; 8905232; 9278503; 8626334 [H]