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The map label for this gene is ycf4 [H]

Identifier: 78779638

GI number: 78779638

Start: 1167086

End: 1167643

Strand: Reverse

Name: ycf4 [H]

Synonym: PMT9312_1255

Alternate gene names: 78779638

Gene position: 1167643-1167086 (Counterclockwise)

Preceding gene: 78779641

Following gene: 78779637

Centisome position: 68.32

GC content: 32.44

Gene sequence:

>558_bases
ATGAATTCAGACCTCACGTCTTTCGATAAAATCGAACAAAAAATTGGTGGATCAAGAAAAACTTCTAATTACATTATTGG
TGGAATGCTAACGATTGGGGGTATTGGTTTTCTTTTGGCCTCCATATCTAGCTATACAGGAAAGGATCTATTACCTCTGG
GGAATCCTTCAACTTTATTGTTTATACCTCAAGGAATAATAATGGGAGCTTATGGAGTAGTTGCTAATTTGTTAAATTTT
TATTTATGGTATATGGTTTACATTAACTTTGGTTCAGGTAGTAATTCTTTTAATAAGTCATCAAAATCTGTTGAAATAAA
AAGAAAAGGATTATTTAAAGATATTGATGTCAAATTAAATTTTGATGAAATTAAATCAGTTAAGTTGGATATAAGTGAGG
GATTTAATCCTAGAAGAAGAATTGCTTTAGTACTCAAAGGTAGGAAAAAACCTCTCCCTCTAAGTGGGGCAGGTGAACTT
AAACCGCTTCTTCAAGTTGAAGAAGAAGGAGCTCGGCTGGCTAAATTTTTGAATGTTAATTTGGAGGGCTTAAAATAA

Upstream 100 bases:

>100_bases
ATGCCTTGTAAAGGTTTTCTGACTTTTTTATTAAAAATTAGGTAAGAATACTCCATTAGTTTGTTAAATTATCTGAATTA
GGATCTAAAAAAAGATAAAA

Downstream 100 bases:

>100_bases
AAAAAAATAATTTATTAAAAACATTATCTTTTATTCAGGTTCTGTTTTTGGTACAAGCATGCAGTTTCAAAAATGAGATC
AGTCCAAATTATTACTGCCA

Product: photosystem I assembly protein Ycf4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MNSDLTSFDKIEQKIGGSRKTSNYIIGGMLTIGGIGFLLASISSYTGKDLLPLGNPSTLLFIPQGIIMGAYGVVANLLNF
YLWYMVYINFGSGSNSFNKSSKSVEIKRKGLFKDIDVKLNFDEIKSVKLDISEGFNPRRRIALVLKGRKKPLPLSGAGEL
KPLLQVEEEGARLAKFLNVNLEGLK

Sequences:

>Translated_185_residues
MNSDLTSFDKIEQKIGGSRKTSNYIIGGMLTIGGIGFLLASISSYTGKDLLPLGNPSTLLFIPQGIIMGAYGVVANLLNF
YLWYMVYINFGSGSNSFNKSSKSVEIKRKGLFKDIDVKLNFDEIKSVKLDISEGFNPRRRIALVLKGRKKPLPLSGAGEL
KPLLQVEEEGARLAKFLNVNLEGLK
>Mature_185_residues
MNSDLTSFDKIEQKIGGSRKTSNYIIGGMLTIGGIGFLLASISSYTGKDLLPLGNPSTLLFIPQGIIMGAYGVVANLLNF
YLWYMVYINFGSGSNSFNKSSKSVEIKRKGLFKDIDVKLNFDEIKSVKLDISEGFNPRRRIALVLKGRKKPLPLSGAGEL
KPLLQVEEEGARLAKFLNVNLEGLK

Specific function: Seems to be required for the assembly of the photosystem I complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ycf4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003359
- ProDom:   PD003698 [H]

Pfam domain/function: PF02392 Ycf4 [H]

EC number: NA

Molecular weight: Translated: 20308; Mature: 20308

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSDLTSFDKIEQKIGGSRKTSNYIIGGMLTIGGIGFLLASISSYTGKDLLPLGNPSTLL
CCCCCHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
FIPQGIIMGAYGVVANLLNFYLWYMVYINFGSGSNSFNKSSKSVEIKRKGLFKDIDVKLN
EECCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCEEEHHCCCCEEEEEEEC
FDEIKSVKLDISEGFNPRRRIALVLKGRKKPLPLSGAGELKPLLQVEEEGARLAKFLNVN
HHHHHEEEEECCCCCCHHHEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
LEGLK
CCCCC
>Mature Secondary Structure
MNSDLTSFDKIEQKIGGSRKTSNYIIGGMLTIGGIGFLLASISSYTGKDLLPLGNPSTLL
CCCCCHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
FIPQGIIMGAYGVVANLLNFYLWYMVYINFGSGSNSFNKSSKSVEIKRKGLFKDIDVKLN
EECCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCEEEHHCCCCEEEEEEEC
FDEIKSVKLDISEGFNPRRRIALVLKGRKKPLPLSGAGELKPLLQVEEEGARLAKFLNVN
HHHHHEEEEECCCCCCHHHEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
LEGLK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA