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The map label for this gene is infA1 [H]

Identifier: 78779631

GI number: 78779631

Start: 1163126

End: 1163392

Strand: Reverse

Name: infA1 [H]

Synonym: PMT9312_1248

Alternate gene names: 78779631

Gene position: 1163392-1163126 (Counterclockwise)

Preceding gene: 78779632

Following gene: 78779627

Centisome position: 68.07

GC content: 35.21

Gene sequence:

>267_bases
ATGATTGAAACTTCAGGTGTAATAGAAAAAGAGCAGGGAAATGGATTTTATTTGGTTACCTTAGAGCAGCCTGAAGGTCA
TCAATGTTTATGCAGAGCTGCAGGTAAATTGACTAAATTTAGAATTAAATTATTAGCTGGAGACAAAGTGTTAGTTGAGA
TAAGTCCTTATGATCTTTCTAGAGGGAGGATAACTTATAGAGAGAGGAATGCAGGGGGTGCCAGACCTATGACTAATAAA
AATAATCCTAAGAGGAATAATAAGTAA

Upstream 100 bases:

>100_bases
CAATTTAAATTGAATTCCATATTTTTAAGCATTTAATTTTTCTATAATCAATTTTGGCCAATCTTTTTCTGATAATATAA
ATTTAGTAAAAAATTAATTA

Downstream 100 bases:

>100_bases
ACATCTACTTTATATAATATTTTTTATAGCTTCTTTAAATTCACTTCTTTGTTTAACACCTTGCCATTGTTTTTTTAATA
ATTTGTCTTTAAAAAGTTGA

Product: translation initiation factor IF-1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 88

Protein sequence:

>88_residues
MIETSGVIEKEQGNGFYLVTLEQPEGHQCLCRAAGKLTKFRIKLLAGDKVLVEISPYDLSRGRITYRERNAGGARPMTNK
NNPKRNNK

Sequences:

>Translated_88_residues
MIETSGVIEKEQGNGFYLVTLEQPEGHQCLCRAAGKLTKFRIKLLAGDKVLVEISPYDLSRGRITYRERNAGGARPMTNK
NNPKRNNK
>Mature_88_residues
MIETSGVIEKEQGNGFYLVTLEQPEGHQCLCRAAGKLTKFRIKLLAGDKVLVEISPYDLSRGRITYRERNAGGARPMTNK
NNPKRNNK

Specific function: No specific function has so far been attributed to this initiation factor; however, it seems to stimulate more or less all the activities of the other two initiation factors, IF-2 and IF-3 [H]

COG id: COG0361

COG function: function code J; Translation initiation factor 1 (IF-1)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR022967
- InterPro:   IPR006196
- InterPro:   IPR004368 [H]

Pfam domain/function: PF01176 eIF-1a [H]

EC number: NA

Molecular weight: Translated: 9892; Mature: 9892

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: PS50832 S1_IF1_TYPE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIETSGVIEKEQGNGFYLVTLEQPEGHQCLCRAAGKLTKFRIKLLAGDKVLVEISPYDLS
CCCCCCCEEEECCCCEEEEEEECCCCCHHHHHHCCCCEEEEEEEEECCEEEEEECCCCCC
RGRITYRERNAGGARPMTNKNNPKRNNK
CCEEEEEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIETSGVIEKEQGNGFYLVTLEQPEGHQCLCRAAGKLTKFRIKLLAGDKVLVEISPYDLS
CCCCCCCEEEECCCCEEEEEEECCCCCHHHHHHCCCCEEEEEEEEECCEEEEEECCCCCC
RGRITYRERNAGGARPMTNKNNPKRNNK
CCEEEEEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA