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The map label for this gene is 78779538

Identifier: 78779538

GI number: 78779538

Start: 1071098

End: 1072192

Strand: Reverse

Name: 78779538

Synonym: PMT9312_1155

Alternate gene names: NA

Gene position: 1072192-1071098 (Counterclockwise)

Preceding gene: 78779539

Following gene: 78779537

Centisome position: 62.73

GC content: 34.52

Gene sequence:

>1095_bases
ATGAAAAACGAAAAAATATCTTTATCTTTCACAGAGGGTTCATCTGACAAAGTTTATCAAGCAGAACTAAAGGAAGTTGA
TGGTGGTTTTAATGTGACCTTTCAATATGGTCGAAGAGGAAAACCCCTCCAAAGTGGGACAAAAACAAAAACTCCTGCTA
CTTATGATGATGCGAAAAAAATATATGACAAGTTAGTACTATCAAAAACCTCAAAGGGATATGCACCTGAAGATAGTTCA
GTTGAGTATGCAGAGACAGAAAAAGCTGGAGAATCTACTGACTTTAAACCTCAATTATTAAACCCGATTAATAATGAAAA
TCTTGAAGAACTTTTCAATAATTTTTCTAGAGTTTATATGCAGACAAAACATGATGGAGAACGTAGGGGCGCAAGTATTA
ATAACTCAGAAATCATTGCATCTAACCGCAAAGGTTTGCGAGTAGGTTTGCAGAAACCTATTCAGGATGCACTGGAAAAA
CTAAAAGACGGAGGGTTTATAGATACAGAAATAGATTCTGAAGACATGGGGGATCATTTAGTTATCTTTGATGTTCTCAA
GTTCAAAGGCTTGGAAACTAAAGAAAATTCATTTAGCGATCGTGTTACTTATCTTGAGAAACTTGGAGAAGAAATCAAAT
CAAAAAAACTTGATAATGCTTTAAAAGTTGATTACCCAACCATTGCAGATAGCTTAGAAAAAGTTAAAGATTTTGTAGAA
AGCGCAAAATCAAAAAATGAAGAGGGAGTTGTTTTTAAAAATGGAGATGCAACATACAACGAAGGCAGACCAAGTTCTGG
AGGAAACGCTCTTAAGCTTAAATTTGTAGAAAGTGCCACGCTGCGTGTCTCTTCAATTACGGAAGGTAAGCGTTCTGTAT
CTATCGAAATAAATGATAATGGAATTTGGATATCTGTAGGTAAGTGTACGGTTCCTGCTAATCAAGATATTCCAAATCCA
GGCGAATTAATTGAAGTGGATTATCTATATGCCATTAAAGATGGTGCTCTTTTTCAACCTATTTATAAAGGAAAGCGTAA
TGATCTAGATGAAACTGCAGCTGTAATTTCTCAGCTTAAATATAAAAAAGATTAA

Upstream 100 bases:

>100_bases
TTTAATATAAATAGTTCATTTATAGATATTTATAGATTTCTATAATTTTTATATTTATACTGCTAGAAGTTTAAAGTTCT
AGGATTTTTAAATCTTTAAC

Downstream 100 bases:

>100_bases
ATGATTTTTTTTAATTAGAACCGGATTAATCTGACTAGATATTTTTAAAAATGAAACCAGTTTCCATATACTCTTTCTAT
ATTCATTTGAAGGCATATGA

Product: ATP-dependent DNA ligase

Products: NA

Alternate protein names: ATP Dependent DNA Ligase

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MKNEKISLSFTEGSSDKVYQAELKEVDGGFNVTFQYGRRGKPLQSGTKTKTPATYDDAKKIYDKLVLSKTSKGYAPEDSS
VEYAETEKAGESTDFKPQLLNPINNENLEELFNNFSRVYMQTKHDGERRGASINNSEIIASNRKGLRVGLQKPIQDALEK
LKDGGFIDTEIDSEDMGDHLVIFDVLKFKGLETKENSFSDRVTYLEKLGEEIKSKKLDNALKVDYPTIADSLEKVKDFVE
SAKSKNEEGVVFKNGDATYNEGRPSSGGNALKLKFVESATLRVSSITEGKRSVSIEINDNGIWISVGKCTVPANQDIPNP
GELIEVDYLYAIKDGALFQPIYKGKRNDLDETAAVISQLKYKKD

Sequences:

>Translated_364_residues
MKNEKISLSFTEGSSDKVYQAELKEVDGGFNVTFQYGRRGKPLQSGTKTKTPATYDDAKKIYDKLVLSKTSKGYAPEDSS
VEYAETEKAGESTDFKPQLLNPINNENLEELFNNFSRVYMQTKHDGERRGASINNSEIIASNRKGLRVGLQKPIQDALEK
LKDGGFIDTEIDSEDMGDHLVIFDVLKFKGLETKENSFSDRVTYLEKLGEEIKSKKLDNALKVDYPTIADSLEKVKDFVE
SAKSKNEEGVVFKNGDATYNEGRPSSGGNALKLKFVESATLRVSSITEGKRSVSIEINDNGIWISVGKCTVPANQDIPNP
GELIEVDYLYAIKDGALFQPIYKGKRNDLDETAAVISQLKYKKD
>Mature_364_residues
MKNEKISLSFTEGSSDKVYQAELKEVDGGFNVTFQYGRRGKPLQSGTKTKTPATYDDAKKIYDKLVLSKTSKGYAPEDSS
VEYAETEKAGESTDFKPQLLNPINNENLEELFNNFSRVYMQTKHDGERRGASINNSEIIASNRKGLRVGLQKPIQDALEK
LKDGGFIDTEIDSEDMGDHLVIFDVLKFKGLETKENSFSDRVTYLEKLGEEIKSKKLDNALKVDYPTIADSLEKVKDFVE
SAKSKNEEGVVFKNGDATYNEGRPSSGGNALKLKFVESATLRVSSITEGKRSVSIEINDNGIWISVGKCTVPANQDIPNP
GELIEVDYLYAIKDGALFQPIYKGKRNDLDETAAVISQLKYKKD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40523; Mature: 40523

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS50160 DNA_LIGASE_A3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNEKISLSFTEGSSDKVYQAELKEVDGGFNVTFQYGRRGKPLQSGTKTKTPATYDDAKK
CCCCEEEEEEECCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHH
IYDKLVLSKTSKGYAPEDSSVEYAETEKAGESTDFKPQLLNPINNENLEELFNNFSRVYM
HHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHEE
QTKHDGERRGASINNSEIIASNRKGLRVGLQKPIQDALEKLKDGGFIDTEIDSEDMGDHL
ECCCCHHHCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCEE
VIFDVLKFKGLETKENSFSDRVTYLEKLGEEIKSKKLDNALKVDYPTIADSLEKVKDFVE
EEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
SAKSKNEEGVVFKNGDATYNEGRPSSGGNALKLKFVESATLRVSSITEGKRSVSIEINDN
HHHCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEEECCC
GIWISVGKCTVPANQDIPNPGELIEVDYLYAIKDGALFQPIYKGKRNDLDETAAVISQLK
EEEEEECEEECCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHCCCCCCHHHHHHHHHHHH
YKKD
HCCC
>Mature Secondary Structure
MKNEKISLSFTEGSSDKVYQAELKEVDGGFNVTFQYGRRGKPLQSGTKTKTPATYDDAKK
CCCCEEEEEEECCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHH
IYDKLVLSKTSKGYAPEDSSVEYAETEKAGESTDFKPQLLNPINNENLEELFNNFSRVYM
HHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHEE
QTKHDGERRGASINNSEIIASNRKGLRVGLQKPIQDALEKLKDGGFIDTEIDSEDMGDHL
ECCCCHHHCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCEE
VIFDVLKFKGLETKENSFSDRVTYLEKLGEEIKSKKLDNALKVDYPTIADSLEKVKDFVE
EEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
SAKSKNEEGVVFKNGDATYNEGRPSSGGNALKLKFVESATLRVSSITEGKRSVSIEINDN
HHHCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEEECCC
GIWISVGKCTVPANQDIPNPGELIEVDYLYAIKDGALFQPIYKGKRNDLDETAAVISQLK
EEEEEECEEECCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHCCCCCCHHHHHHHHHHHH
YKKD
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA