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The map label for this gene is crtI [H]

Identifier: 78779509

GI number: 78779509

Start: 1039902

End: 1041446

Strand: Reverse

Name: crtI [H]

Synonym: PMT9312_1126

Alternate gene names: 78779509

Gene position: 1041446-1039902 (Counterclockwise)

Preceding gene: 78779510

Following gene: 78779508

Centisome position: 60.93

GC content: 33.59

Gene sequence:

>1545_bases
ATGAAATCAAATAATAGAAATTTCGATGCAATTATTATCGGCTCAGGAATTGGGGGGTTAGTAACTGCATCACAATTAGC
AGCTAAAGGAGCTCAAGTTTTAGTTCTTGAAAAATATATTATTCCAGGAGGAAGTGGAGGATCCTTTAAAAGAAAAGGTT
ATACCTTTGATGTGGGCGCTTCAATGATTTTTGGATTTGGAAAGGAAGGTTATACCAATTTATTAACTCGTGCTCTAAAA
GATGTAAATGAGAAATGTGAAACTATTCCTGATCCGGTGCAACTGGAATATCACCTTCCAAATAACTTTCATATTTCTGT
AGATAAAAATTACGAACAATTTATCAGTAAATTATCAGCTAGTTTCCCGAAGGAAAAAGAAGGTATCAAGAAATTCTACG
ATACTTGTGCAAGTGTATTTAAATGTTTAGATTCAATGCCTCTTTTATCCATTGAGGATCCAAGTTATCTTTTTAAAGTT
TTCTTTAAAGCTCCATTTTCCTGTTTAGGTTTGGCTAGATGGTTGCCAGTAAATGCAGGAGATGTTGCCAGAAAGTTTAT
AAAAGATCCTGAACTTTTAAAATTTATAGATATCGAATGTTTTTGCTGGTCAGTAATGCCAGCTCTCAAAACTCCTATGA
TTAATGCGGGAATGGTTTTTACAGATAGGCATGCAGGGGGTATAAATTATCCAAAAGGAGGAGTAGGAACAATAGCAGAG
AAGTTAGTTGCTGGTATCGAAAAATTAGGAAGTCAAATTCGTTATAAAGCCAATGTTACTGAAATAATTTTAAAGGATGA
GAAAGCGGTAGGAGTTAAGCTTTCAAATGGGGAAGAAATTTACTCAAATATTATCGTATCTAATTCCACAAGATGGGATA
CATTTGGACTTAAAGATAAGAAGAAAGGATTAATTTCAAGTAAAAATGTGCCAAAAAGTGAATATAAGTGGTCTGAGACA
TATCAACCTTCCCCTTCTTTTGTGTCTATTCACCTCGGGGTAGAAAAAAATCTAATAAGCAATACCTTTAACTGTCATCA
CATAATTGTCGAGAATTGGGATGAATTAGAAAGTGAAAAAGGAGTCATTTTTGTTTCTATACCTACTTTGCTGGACTCAT
CTTTAGCTCCTGAAGGTAAACATATCGTCCATGCATTTACTCCTTCATCAATGAGTGAATGGGAAGGATTATCAAGGAAA
GAATATCTGCAAAAGAAAGAAAAATATTTTTCATTTCTTATTGACAAGATTTCAATTATTTTGCCTAACCTTGAACAAAA
TATTGATCACAAAGAAATTGGCACTCCAAAAACCCATAAAAAGTTTCTTGGAAGATATGAAGGTAGTTATGGACCAATTC
CTAGCAAAAAGTTACTTGGGCTTTTGCCAATGCCTTTTAATACGACAAAAATTAAAAATCTTTATTGCGTAGGCGATTCG
TGCTTTCCAGGTCAAGGCCTAAATGCTGTAGCTTTTAGTGGGTACGCTTGCGCACATAAAATAGGTGCAAAATTAAATAT
AAATAGTTTTAAATTACCAAATTAA

Upstream 100 bases:

>100_bases
TGACGTACTAAATATTTTTAAAAGAAAATTAGATTATATTTTTAATAAAGATCACACACTTGTCAAAATTAATTAAAATA
AGCTACTTGCATAATAGAAA

Downstream 100 bases:

>100_bases
AGGATTCTTAAATGAAAGAAAAGTTTAAAACTCTTTTTTTTGTAAAAAGTTCGTTAATTGCTTTATATCTAGCGCTTACA
ATTCCTATTCCGTTTATAGC

Product: putative carotenoid isomerase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 514; Mature: 514

Protein sequence:

>514_residues
MKSNNRNFDAIIIGSGIGGLVTASQLAAKGAQVLVLEKYIIPGGSGGSFKRKGYTFDVGASMIFGFGKEGYTNLLTRALK
DVNEKCETIPDPVQLEYHLPNNFHISVDKNYEQFISKLSASFPKEKEGIKKFYDTCASVFKCLDSMPLLSIEDPSYLFKV
FFKAPFSCLGLARWLPVNAGDVARKFIKDPELLKFIDIECFCWSVMPALKTPMINAGMVFTDRHAGGINYPKGGVGTIAE
KLVAGIEKLGSQIRYKANVTEIILKDEKAVGVKLSNGEEIYSNIIVSNSTRWDTFGLKDKKKGLISSKNVPKSEYKWSET
YQPSPSFVSIHLGVEKNLISNTFNCHHIIVENWDELESEKGVIFVSIPTLLDSSLAPEGKHIVHAFTPSSMSEWEGLSRK
EYLQKKEKYFSFLIDKISIILPNLEQNIDHKEIGTPKTHKKFLGRYEGSYGPIPSKKLLGLLPMPFNTTKIKNLYCVGDS
CFPGQGLNAVAFSGYACAHKIGAKLNINSFKLPN

Sequences:

>Translated_514_residues
MKSNNRNFDAIIIGSGIGGLVTASQLAAKGAQVLVLEKYIIPGGSGGSFKRKGYTFDVGASMIFGFGKEGYTNLLTRALK
DVNEKCETIPDPVQLEYHLPNNFHISVDKNYEQFISKLSASFPKEKEGIKKFYDTCASVFKCLDSMPLLSIEDPSYLFKV
FFKAPFSCLGLARWLPVNAGDVARKFIKDPELLKFIDIECFCWSVMPALKTPMINAGMVFTDRHAGGINYPKGGVGTIAE
KLVAGIEKLGSQIRYKANVTEIILKDEKAVGVKLSNGEEIYSNIIVSNSTRWDTFGLKDKKKGLISSKNVPKSEYKWSET
YQPSPSFVSIHLGVEKNLISNTFNCHHIIVENWDELESEKGVIFVSIPTLLDSSLAPEGKHIVHAFTPSSMSEWEGLSRK
EYLQKKEKYFSFLIDKISIILPNLEQNIDHKEIGTPKTHKKFLGRYEGSYGPIPSKKLLGLLPMPFNTTKIKNLYCVGDS
CFPGQGLNAVAFSGYACAHKIGAKLNINSFKLPN
>Mature_514_residues
MKSNNRNFDAIIIGSGIGGLVTASQLAAKGAQVLVLEKYIIPGGSGGSFKRKGYTFDVGASMIFGFGKEGYTNLLTRALK
DVNEKCETIPDPVQLEYHLPNNFHISVDKNYEQFISKLSASFPKEKEGIKKFYDTCASVFKCLDSMPLLSIEDPSYLFKV
FFKAPFSCLGLARWLPVNAGDVARKFIKDPELLKFIDIECFCWSVMPALKTPMINAGMVFTDRHAGGINYPKGGVGTIAE
KLVAGIEKLGSQIRYKANVTEIILKDEKAVGVKLSNGEEIYSNIIVSNSTRWDTFGLKDKKKGLISSKNVPKSEYKWSET
YQPSPSFVSIHLGVEKNLISNTFNCHHIIVENWDELESEKGVIFVSIPTLLDSSLAPEGKHIVHAFTPSSMSEWEGLSRK
EYLQKKEKYFSFLIDKISIILPNLEQNIDHKEIGTPKTHKKFLGRYEGSYGPIPSKKLLGLLPMPFNTTKIKNLYCVGDS
CFPGQGLNAVAFSGYACAHKIGAKLNINSFKLPN

Specific function: This enzyme converts phytoene into lycopene via the intermediaries of phytofluene, zeta-carotene and neurosporene by the introduction of four double bonds [H]

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17540238, Length=557, Percent_Identity=23.3393177737882, Blast_Score=92, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR008150
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 57038; Mature: 57038

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSNNRNFDAIIIGSGIGGLVTASQLAAKGAQVLVLEKYIIPGGSGGSFKRKGYTFDVGA
CCCCCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCEEEECCC
SMIFGFGKEGYTNLLTRALKDVNEKCETIPDPVQLEYHLPNNFHISVDKNYEQFISKLSA
HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHH
SFPKEKEGIKKFYDTCASVFKCLDSMPLLSIEDPSYLFKVFFKAPFSCLGLARWLPVNAG
CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCHHHHHHHHHCCCCHH
DVARKFIKDPELLKFIDIECFCWSVMPALKTPMINAGMVFTDRHAGGINYPKGGVGTIAE
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHH
KLVAGIEKLGSQIRYKANVTEIILKDEKAVGVKLSNGEEIYSNIIVSNSTRWDTFGLKDK
HHHHHHHHHHHHEEEECCCEEEEEECCCEEEEEECCCHHHHHHEEECCCCCCCCCCCCHH
KKGLISSKNVPKSEYKWSETYQPSPSFVSIHLGVEKNLISNTFNCHHIIVENWDELESEK
HCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHCCCCEEEEEECCHHHHCCCC
GVIFVSIPTLLDSSLAPEGKHIVHAFTPSSMSEWEGLSRKEYLQKKEKYFSFLIDKISII
CEEEEEEHHHHCCCCCCCCCEEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LPNLEQNIDHKEIGTPKTHKKFLGRYEGSYGPIPSKKLLGLLPMPFNTTKIKNLYCVGDS
CCCHHHCCCHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHEECCCCCCCCEEEEEEEECCC
CFPGQGLNAVAFSGYACAHKIGAKLNINSFKLPN
CCCCCCCCEEEECCHHHHHHCCCEEECCCCCCCC
>Mature Secondary Structure
MKSNNRNFDAIIIGSGIGGLVTASQLAAKGAQVLVLEKYIIPGGSGGSFKRKGYTFDVGA
CCCCCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCEEEECCC
SMIFGFGKEGYTNLLTRALKDVNEKCETIPDPVQLEYHLPNNFHISVDKNYEQFISKLSA
HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHH
SFPKEKEGIKKFYDTCASVFKCLDSMPLLSIEDPSYLFKVFFKAPFSCLGLARWLPVNAG
CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCHHHHHHHHHCCCCHH
DVARKFIKDPELLKFIDIECFCWSVMPALKTPMINAGMVFTDRHAGGINYPKGGVGTIAE
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHH
KLVAGIEKLGSQIRYKANVTEIILKDEKAVGVKLSNGEEIYSNIIVSNSTRWDTFGLKDK
HHHHHHHHHHHHEEEECCCEEEEEECCCEEEEEECCCHHHHHHEEECCCCCCCCCCCCHH
KKGLISSKNVPKSEYKWSETYQPSPSFVSIHLGVEKNLISNTFNCHHIIVENWDELESEK
HCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHCCCCEEEEEECCHHHHCCCC
GVIFVSIPTLLDSSLAPEGKHIVHAFTPSSMSEWEGLSRKEYLQKKEKYFSFLIDKISII
CEEEEEEHHHHCCCCCCCCCEEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LPNLEQNIDHKEIGTPKTHKKFLGRYEGSYGPIPSKKLLGLLPMPFNTTKIKNLYCVGDS
CCCHHHCCCHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHEECCCCCCCCEEEEEEEECCC
CFPGQGLNAVAFSGYACAHKIGAKLNINSFKLPN
CCCCCCCCEEEECCHHHHHHCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2254247 [H]