BacMap

Definition	Prochlorococcus marinus str. MIT 9312, complete genome.
Accession	NC_007577
Length	1,709,204

Click here to switch to the map view.

The map label for this gene is ylmA [H]

Identifier: 78779200

GI number: 78779200

Start: 756858

End: 757646

Strand: Reverse

Name: ylmA [H]

Synonym: PMT9312_0816

Alternate gene names: 78779200

Gene position: 757646-756858 (Counterclockwise)

Preceding gene: 78779201

Following gene: 78779198

Centisome position: 44.33

GC content: 24.33

Gene sequence:

>789_bases
GTGGTTAATAAATTTTGGTTTGAAGCCAAAAAAATAAATTGTTATAAGAACGGTAATAGAGTAATTAAAAATTTAGACTT
AAAAATAGCCTATTCAGAGAATGTAATATTAATTGGACCAAATGGTTCAGGTAAATCATCATTAATAGATGTAATTAATA
GAAACATCTACCCAGTAGTGACTAATGAATCAAAACTTAAAATATTTGACAAAGAACTTATAAATTTATGGGAACTAAGA
AAAAGAATAAGTACAGTAAATAATGATATTAAAAATAGAATAAATCCAAATCTACAAGTTTTTGATTTAATTTTAAGTGG
ACTATATGGAAAATATTGTTATGTATCAAATAAATCTGCAAGTGACCATTATAAGGTAGAAAGTCTTATGGAAAATATGA
ATATATCAAATTTATCTAAAAAATATTTTTCCTATTTATCAGATGGAGAAAAACAAATTTCTCTCATTGCCAGAGCGTTA
ATTAAAAAACCAAATGTAATGATTTTAGATGAACCAATTGCAAATTTAGATTATAAATCAAAGTATTTTGTAATTGACAA
GATTAATGAATTAACAAAATCAAATACAAACATATTCTGTGTAACACACGATATTTCAATGATTACAAAAATCTATGACC
GAGTCATAATGCTAAAGGAGGGGGAGATAATCGCTGATGGCAATCAAAAGAAGATTATAAATAGTGAAAATCTTAATAAG
TTATATGGAATTGATGTAGAAGTAATTGAAAATAATGGATTTTGGAATATTAATAGATTATCTAAATAA

Upstream 100 bases:

>100_bases
TGAAGAAAGTAAATAGACCTTCATGGTTGAATTGGCTTTATCTTTTTATATTTATTTTAAGCTCAATTCAATTAGTTATA
TTTTGGAGTAATAAGTTTTA

Downstream 100 bases:

>100_bases
AAATTAGAAAAATAGCTAAAGCAATAGCAAGAATAATTAATTTTTTCTTATTAAAAAATGAATAAGATTTTTTTCTAAAT
GAAGAAGATCCACATTTAGA

Product: ATPase

Products: ADP; phosphate; iron (III) hydroxamate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MVNKFWFEAKKINCYKNGNRVIKNLDLKIAYSENVILIGPNGSGKSSLIDVINRNIYPVVTNESKLKIFDKELINLWELR
KRISTVNNDIKNRINPNLQVFDLILSGLYGKYCYVSNKSASDHYKVESLMENMNISNLSKKYFSYLSDGEKQISLIARAL
IKKPNVMILDEPIANLDYKSKYFVIDKINELTKSNTNIFCVTHDISMITKIYDRVIMLKEGEIIADGNQKKIINSENLNK
LYGIDVEVIENNGFWNINRLSK

Sequences:

>Translated_262_residues
MVNKFWFEAKKINCYKNGNRVIKNLDLKIAYSENVILIGPNGSGKSSLIDVINRNIYPVVTNESKLKIFDKELINLWELR
KRISTVNNDIKNRINPNLQVFDLILSGLYGKYCYVSNKSASDHYKVESLMENMNISNLSKKYFSYLSDGEKQISLIARAL
IKKPNVMILDEPIANLDYKSKYFVIDKINELTKSNTNIFCVTHDISMITKIYDRVIMLKEGEIIADGNQKKIINSENLNK
LYGIDVEVIENNGFWNINRLSK
>Mature_262_residues
MVNKFWFEAKKINCYKNGNRVIKNLDLKIAYSENVILIGPNGSGKSSLIDVINRNIYPVVTNESKLKIFDKELINLWELR
KRISTVNNDIKNRINPNLQVFDLILSGLYGKYCYVSNKSASDHYKVESLMENMNISNLSKKYFSYLSDGEKQISLIARAL
IKKPNVMILDEPIANLDYKSKYFVIDKINELTKSNTNIFCVTHDISMITKIYDRVIMLKEGEIIADGNQKKIINSENLNK
LYGIDVEVIENNGFWNINRLSK

Specific function: Part Of The Binding-Protein-Dependent Transport System For Iron(III)-Ferrichrome. Probably Responsible For Energy Coupling To The Transport System. [C]

COG id: COG1119

COG function: function code P; ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI9955968, Length=232, Percent_Identity=24.1379310344828, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI9955966, Length=232, Percent_Identity=24.1379310344828, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI45243524, Length=232, Percent_Identity=24.1379310344828, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI255708477, Length=230, Percent_Identity=27.3913043478261, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI171184400, Length=228, Percent_Identity=26.3157894736842, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI42490749, Length=230, Percent_Identity=24.3478260869565, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI148612844, Length=226, Percent_Identity=26.1061946902655, Blast_Score=68, Evalue=8e-12,
Organism=Escherichia coli, GI1786345, Length=248, Percent_Identity=26.2096774193548, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1786803, Length=236, Percent_Identity=27.1186440677966, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1787029, Length=239, Percent_Identity=28.4518828451883, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1787089, Length=224, Percent_Identity=28.5714285714286, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1789672, Length=214, Percent_Identity=28.9719626168224, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1788506, Length=227, Percent_Identity=27.7533039647577, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1790739, Length=234, Percent_Identity=23.5042735042735, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1790544, Length=244, Percent_Identity=26.6393442622951, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788225, Length=225, Percent_Identity=26.2222222222222, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1786872, Length=191, Percent_Identity=30.8900523560209, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1787370, Length=221, Percent_Identity=28.0542986425339, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788761, Length=207, Percent_Identity=27.536231884058, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787547, Length=237, Percent_Identity=26.5822784810127, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI87081709, Length=235, Percent_Identity=26.3829787234043, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787164, Length=209, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788450, Length=227, Percent_Identity=25.1101321585903, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1789593, Length=235, Percent_Identity=26.8085106382979, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787712, Length=205, Percent_Identity=27.8048780487805, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1789032, Length=219, Percent_Identity=26.4840182648402, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787500, Length=231, Percent_Identity=24.2424242424242, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787758, Length=237, Percent_Identity=23.6286919831224, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786975, Length=195, Percent_Identity=26.6666666666667, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1786319, Length=226, Percent_Identity=23.8938053097345, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787759, Length=236, Percent_Identity=25.8474576271186, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1789873, Length=216, Percent_Identity=24.0740740740741, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789963, Length=227, Percent_Identity=24.2290748898678, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786253, Length=233, Percent_Identity=21.8884120171674, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI145693107, Length=236, Percent_Identity=23.3050847457627, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790162, Length=222, Percent_Identity=26.1261261261261, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787143, Length=225, Percent_Identity=24.4444444444444, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI48994883, Length=228, Percent_Identity=25.4385964912281, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI87082267, Length=204, Percent_Identity=25.4901960784314, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787112, Length=232, Percent_Identity=21.551724137931, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790467, Length=214, Percent_Identity=27.1028037383178, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1789991, Length=229, Percent_Identity=25.764192139738, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1787182, Length=264, Percent_Identity=24.2424242424242, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786398, Length=219, Percent_Identity=26.027397260274, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48995001, Length=249, Percent_Identity=22.0883534136546, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789891, Length=213, Percent_Identity=25.3521126760563, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87082268, Length=242, Percent_Identity=23.1404958677686, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787792, Length=217, Percent_Identity=23.5023041474654, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789586, Length=227, Percent_Identity=25.5506607929515, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787041, Length=212, Percent_Identity=25, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17569145, Length=232, Percent_Identity=28.448275862069, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI193202349, Length=228, Percent_Identity=25.4385964912281, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17541710, Length=221, Percent_Identity=26.6968325791855, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71992285, Length=233, Percent_Identity=28.3261802575107, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17565938, Length=235, Percent_Identity=28.0851063829787, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193209708, Length=225, Percent_Identity=29.3333333333333, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI115535101, Length=225, Percent_Identity=27.5555555555556, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI212646699, Length=238, Percent_Identity=25.6302521008403, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17567265, Length=225, Percent_Identity=28.8888888888889, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI193211015, Length=242, Percent_Identity=25.2066115702479, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17558664, Length=218, Percent_Identity=25.6880733944954, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193211017, Length=242, Percent_Identity=25.2066115702479, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193208177, Length=234, Percent_Identity=26.0683760683761, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71992290, Length=230, Percent_Identity=24.7826086956522, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17567269, Length=217, Percent_Identity=26.2672811059908, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71996809, Length=224, Percent_Identity=26.7857142857143, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17569143, Length=232, Percent_Identity=26.2931034482759, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193209740, Length=231, Percent_Identity=26.4069264069264, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6321752, Length=222, Percent_Identity=27.4774774774775, Blast_Score=74, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6324985, Length=224, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322980, Length=227, Percent_Identity=25.1101321585903, Blast_Score=71, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6321720, Length=217, Percent_Identity=24.8847926267281, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6323217, Length=243, Percent_Identity=27.5720164609054, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI17136662, Length=216, Percent_Identity=27.3148148148148, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI281363262, Length=231, Percent_Identity=26.4069264069264, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24653245, Length=231, Percent_Identity=26.4069264069264, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI85726357, Length=226, Percent_Identity=28.7610619469027, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24659289, Length=225, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI21357907, Length=220, Percent_Identity=26.3636363636364, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI85816269, Length=224, Percent_Identity=23.6607142857143, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24580553, Length=224, Percent_Identity=23.6607142857143, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI85724864, Length=224, Percent_Identity=23.6607142857143, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24580555, Length=224, Percent_Identity=23.6607142857143, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24641565, Length=226, Percent_Identity=26.5486725663717, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 30234; Mature: 30234

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNKFWFEAKKINCYKNGNRVIKNLDLKIAYSENVILIGPNGSGKSSLIDVINRNIYPVV
CCCCEEEEEEEEEEEECCCEEEEEEEEEEEEECCEEEECCCCCCHHHHHHHHCCCEEEEE
TNESKLKIFDKELINLWELRKRISTVNNDIKNRINPNLQVFDLILSGLYGKYCYVSNKSA
ECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCC
SDHYKVESLMENMNISNLSKKYFSYLSDGEKQISLIARALIKKPNVMILDEPIANLDYKS
CCHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
KYFVIDKINELTKSNTNIFCVTHDISMITKIYDRVIMLKEGEIIADGNQKKIINSENLNK
EEEEEECHHHHHCCCCEEEEEECCHHHHHHHHHHEEEEECCCEEECCCCCEEECCCCCCE
LYGIDVEVIENNGFWNINRLSK
EECCEEEEEECCCEEEECCCCC
>Mature Secondary Structure
MVNKFWFEAKKINCYKNGNRVIKNLDLKIAYSENVILIGPNGSGKSSLIDVINRNIYPVV
CCCCEEEEEEEEEEEECCCEEEEEEEEEEEEECCEEEECCCCCCHHHHHHHHCCCEEEEE
TNESKLKIFDKELINLWELRKRISTVNNDIKNRINPNLQVFDLILSGLYGKYCYVSNKSA
ECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCC
SDHYKVESLMENMNISNLSKKYFSYLSDGEKQISLIARALIKKPNVMILDEPIANLDYKS
CCHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
KYFVIDKINELTKSNTNIFCVTHDISMITKIYDRVIMLKEGEIIADGNQKKIINSENLNK
EEEEEECHHHHHCCCCEEEEEECCHHHHHHHHHHEEEEECCCEEECCCCCEEECCCCCCE
LYGIDVEVIENNGFWNINRLSK
EECCEEEEEECCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron (III) hydroxamate [Periplasm]; H2O [C]

Specific reaction: ATP + iron (III) hydroxamate [Periplasm] + H2O = ADP + phosphate + iron (III) hydroxamate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]