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The map label for this gene is lhr [C]

Identifier: 78779116

GI number: 78779116

Start: 682628

End: 685114

Strand: Reverse

Name: lhr [C]

Synonym: PMT9312_0732

Alternate gene names: 78779116

Gene position: 685114-682628 (Counterclockwise)

Preceding gene: 78779117

Following gene: 78779115

Centisome position: 40.08

GC content: 30.48

Gene sequence:

>2487_bases
ATGAATAATATTAAACAAAATAGTAGGCAAAGTAATTCTATTTCTAAAATTAAACAGTTTTTCTTCTCAAATGGATGGGA
GCCATTAACCTACCAAGAAGAATCTTGGAAAGCATTTTTAAATGGGGAAAACGGACTAATACAAGTTCCTACTGGATGCG
GCAAAACTTACGCTTCATTAATGGGACCTTTATCACAGTTAGAAGATCCCAAAAATAATAAAAGTGTGCAAATATTATTA
ATAACGCCTTTAAAAGCACTAAGTAGAGATCTAAAAAATTCCGTCCAATTAGCAGCTTTACATTTTAATAAAGAAATCAC
TGTTGAAATCAGGAATGGGGATACAACCCCATATGAAAAGAAAAAGCAACTAGCTAAACCACCTAATATTCTTATCACGA
CTCCAGAGTCTTTATCTCTTTTACTTTCTAATAAAGGATCTAATAATCTGTTTAAGGAGTTGTCATCAATAATTATTGAC
GAATGGCATGAATTGATGGGTAGTAAAAGAGGAAACCAGTGCGAGTTATCTTTAAGTTGGCTAAGAGGTAATATTAAAAA
TTTACAAATTTGGGCAATGTCTGCAACTATTGGAAATATTGAAGAAGCAGCAAGAGCAATAGTTGGTATGAGCGCTATAA
AACCCAAAATTATAAGTACAAATATTCAAAAAGAGATAGAAATTATAAGCGTTTTACCAGAGGAGGAAACGACCTTTCCA
TGGAGTGGCCATCTAGGAATAAGAAGTCATTCTTCACTTTTAAAAATCCTAGATAAAAATAAAAGCACCCTATTATTCAC
CAATACAAGAAATCAATCTGAAAGATGGTATCAATGTCTTAAATTTTTTCTGCCAGAGATGGAAGACAAAATCGCACTTC
ATCACGGCTCCCTCGATAAAGAAGATAGAAAAAAAGTTGAAGAAGGGGTTAAAGACGGATTAATAAAATGGGTAGTCTGC
ACCAGCTCGCTAGATTTGGGAGTTGACTTCCAACCTGTAGATCAAATAGTTCAAATTGGTAGTGCAAAGAATTTAGCTAG
ACTTATCCAAAGAGCGGGAAGAAGTGCTCATAGACCAGGCGGGAAATCAAAAATAATTTTTATGCCTACCAATTCTTTGG
AGTTATTTGAGATTAGTGCAATGAGAAGAATAATAAAAAGTGGTATATCTGAGGAAATTAGACTTCCTGAATTATCTTAT
GATGTACTTCTTCAACATCTAATAAGTTTGGCATGCGGAAATGGCTTTGATCCGAAAATTGAGAAAGAAAGAATTAAAAG
TTGTTGGAGTTATAGAAACTTAAAAGATCAAGATTGGGATTGGTGTCTTGACTTTTTAGAATATGGAGGAAAATGTCTTA
AAGCATACCCAAAATATAAAAAGATAATTAAAGAAGAATCACAAAATAATAATGTAAACTTTAAATATTTTGTAAAAGAC
AAATCTTTAATAAGAATGCATAAGTTCAATATTGGGACAATTACGAGCGACAAATTTGTGAATGTAAAATATATGAAAGG
TAAATCCTTGGGAAATTTAGAAGAGAATTTTGCCTCAAAATTAAATCCTGGAGATACCTTTTACTTTGCCGGTAAAATGC
TTCAATTTGTAAGAATCAGAGATATGATTTTATACGTTAAAAAATCTACAAAAAAAAGTTCTCTAATTCCTGCATGGGTT
GGAGGTCAAATGGCAATTTCTGATCTACTTTGTGAAAGTTTGAGAAAAGAAATAGATATATGCAATGAACCAGAAAATTA
TGATTGCTCGAATCCTGAACTAAATTCATTACGCCCAATATTGAAGAAACAAAAGGTTCTTTCAAATATTCCAAAGAAAG
ATGAATTCCTTATAGAAATATATAAAACCAAGGATTTATCAACTATTTTTGTTTTTACACTTGATGGCAAATTTGTAAAT
GAAGGAATTGCATTTCTATGGGCTTTAAGATTAGCAAAATTAAAACAATCTACATTTAGTATTACTGCTAATGATTTTGG
ATTCAGCTTAACTAGCTCAGAAGATTATGATTTTTCCATAATTAAAAAAGAAGCTGATTATTTTTTTGATAACAAAAAAT
TAGAGGAAGATCTAGAAAATGCAATAAATTTTTCAGAATTGACAAAACGTAGATTTAAACATATTGCCCAGATAAGTGGA
CTAGTAAATCAAAATAATCCAACCAAAACAAAAACTTCTTCTCAACTTCAAATAAGTTCAAGTCTTTTCTACGATGTCTT
TACTAAATATGAAGAAGGCCATCTTTTGATAAAACAATCGCATCAAGAAGTTAAAGAATATCAATTAGAAAATAAAAGAA
TATCTAGATCATTAGAAAGATTAAAGAATTTAAAAATGCTATTAAACGAGATAAAAACTCCAACTCCTTTTGCTTTCCCT
TTATTAGTTGAAAGACTTAAAAATACCTTAAGCAATGAACCAATAGAAAGAAGAGTAGAAAAACTTATAAAAAAATATAG
TGATTAA

Upstream 100 bases:

>100_bases
TAGCAGTAAGATTTCCAAGAATAACGAAATGGAGAAAAGATAAAAAAATTAATGATGCAGATAGTCTAGAGAATGCTTAT
GCACTGATGAAAAAAATATC

Downstream 100 bases:

>100_bases
ATGAAAAAAAGTACTTTTAAATTTTGTTGGGAAGATACATTGTTAGAGATGCTTCCTTTAAGAGCGTTATTTCTACCGAT
AACAAAAGAGTTGTTAATAT

Product: DEAD/DEAH box helicase-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 828; Mature: 828

Protein sequence:

>828_residues
MNNIKQNSRQSNSISKIKQFFFSNGWEPLTYQEESWKAFLNGENGLIQVPTGCGKTYASLMGPLSQLEDPKNNKSVQILL
ITPLKALSRDLKNSVQLAALHFNKEITVEIRNGDTTPYEKKKQLAKPPNILITTPESLSLLLSNKGSNNLFKELSSIIID
EWHELMGSKRGNQCELSLSWLRGNIKNLQIWAMSATIGNIEEAARAIVGMSAIKPKIISTNIQKEIEIISVLPEEETTFP
WSGHLGIRSHSSLLKILDKNKSTLLFTNTRNQSERWYQCLKFFLPEMEDKIALHHGSLDKEDRKKVEEGVKDGLIKWVVC
TSSLDLGVDFQPVDQIVQIGSAKNLARLIQRAGRSAHRPGGKSKIIFMPTNSLELFEISAMRRIIKSGISEEIRLPELSY
DVLLQHLISLACGNGFDPKIEKERIKSCWSYRNLKDQDWDWCLDFLEYGGKCLKAYPKYKKIIKEESQNNNVNFKYFVKD
KSLIRMHKFNIGTITSDKFVNVKYMKGKSLGNLEENFASKLNPGDTFYFAGKMLQFVRIRDMILYVKKSTKKSSLIPAWV
GGQMAISDLLCESLRKEIDICNEPENYDCSNPELNSLRPILKKQKVLSNIPKKDEFLIEIYKTKDLSTIFVFTLDGKFVN
EGIAFLWALRLAKLKQSTFSITANDFGFSLTSSEDYDFSIIKKEADYFFDNKKLEEDLENAINFSELTKRRFKHIAQISG
LVNQNNPTKTKTSSQLQISSSLFYDVFTKYEEGHLLIKQSHQEVKEYQLENKRISRSLERLKNLKMLLNEIKTPTPFAFP
LLVERLKNTLSNEPIERRVEKLIKKYSD

Sequences:

>Translated_828_residues
MNNIKQNSRQSNSISKIKQFFFSNGWEPLTYQEESWKAFLNGENGLIQVPTGCGKTYASLMGPLSQLEDPKNNKSVQILL
ITPLKALSRDLKNSVQLAALHFNKEITVEIRNGDTTPYEKKKQLAKPPNILITTPESLSLLLSNKGSNNLFKELSSIIID
EWHELMGSKRGNQCELSLSWLRGNIKNLQIWAMSATIGNIEEAARAIVGMSAIKPKIISTNIQKEIEIISVLPEEETTFP
WSGHLGIRSHSSLLKILDKNKSTLLFTNTRNQSERWYQCLKFFLPEMEDKIALHHGSLDKEDRKKVEEGVKDGLIKWVVC
TSSLDLGVDFQPVDQIVQIGSAKNLARLIQRAGRSAHRPGGKSKIIFMPTNSLELFEISAMRRIIKSGISEEIRLPELSY
DVLLQHLISLACGNGFDPKIEKERIKSCWSYRNLKDQDWDWCLDFLEYGGKCLKAYPKYKKIIKEESQNNNVNFKYFVKD
KSLIRMHKFNIGTITSDKFVNVKYMKGKSLGNLEENFASKLNPGDTFYFAGKMLQFVRIRDMILYVKKSTKKSSLIPAWV
GGQMAISDLLCESLRKEIDICNEPENYDCSNPELNSLRPILKKQKVLSNIPKKDEFLIEIYKTKDLSTIFVFTLDGKFVN
EGIAFLWALRLAKLKQSTFSITANDFGFSLTSSEDYDFSIIKKEADYFFDNKKLEEDLENAINFSELTKRRFKHIAQISG
LVNQNNPTKTKTSSQLQISSSLFYDVFTKYEEGHLLIKQSHQEVKEYQLENKRISRSLERLKNLKMLLNEIKTPTPFAFP
LLVERLKNTLSNEPIERRVEKLIKKYSD
>Mature_828_residues
MNNIKQNSRQSNSISKIKQFFFSNGWEPLTYQEESWKAFLNGENGLIQVPTGCGKTYASLMGPLSQLEDPKNNKSVQILL
ITPLKALSRDLKNSVQLAALHFNKEITVEIRNGDTTPYEKKKQLAKPPNILITTPESLSLLLSNKGSNNLFKELSSIIID
EWHELMGSKRGNQCELSLSWLRGNIKNLQIWAMSATIGNIEEAARAIVGMSAIKPKIISTNIQKEIEIISVLPEEETTFP
WSGHLGIRSHSSLLKILDKNKSTLLFTNTRNQSERWYQCLKFFLPEMEDKIALHHGSLDKEDRKKVEEGVKDGLIKWVVC
TSSLDLGVDFQPVDQIVQIGSAKNLARLIQRAGRSAHRPGGKSKIIFMPTNSLELFEISAMRRIIKSGISEEIRLPELSY
DVLLQHLISLACGNGFDPKIEKERIKSCWSYRNLKDQDWDWCLDFLEYGGKCLKAYPKYKKIIKEESQNNNVNFKYFVKD
KSLIRMHKFNIGTITSDKFVNVKYMKGKSLGNLEENFASKLNPGDTFYFAGKMLQFVRIRDMILYVKKSTKKSSLIPAWV
GGQMAISDLLCESLRKEIDICNEPENYDCSNPELNSLRPILKKQKVLSNIPKKDEFLIEIYKTKDLSTIFVFTLDGKFVN
EGIAFLWALRLAKLKQSTFSITANDFGFSLTSSEDYDFSIIKKEADYFFDNKKLEEDLENAINFSELTKRRFKHIAQISG
LVNQNNPTKTKTSSQLQISSSLFYDVFTKYEEGHLLIKQSHQEVKEYQLENKRISRSLERLKNLKMLLNEIKTPTPFAFP
LLVERLKNTLSNEPIERRVEKLIKKYSD

Specific function: Unknown

COG id: COG1201

COG function: function code R; Lhr-like helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1787942, Length=893, Percent_Identity=23.7402015677492, Blast_Score=204, Evalue=1e-53,
Organism=Saccharomyces cerevisiae, GI9755332, Length=383, Percent_Identity=25.065274151436, Blast_Score=81, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR013701
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR017170 [H]

Pfam domain/function: PF00270 DEAD; PF08494 DEAD_assoc; PF00271 Helicase_C [H]

EC number: 3.6.1.-

Molecular weight: Translated: 94973; Mature: 94973

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNIKQNSRQSNSISKIKQFFFSNGWEPLTYQEESWKAFLNGENGLIQVPTGCGKTYASL
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHEEECCCCCEEECCCCCCHHHHHH
MGPLSQLEDPKNNKSVQILLITPLKALSRDLKNSVQLAALHFNKEITVEIRNGDTTPYEK
HCCHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHEEEEEEECCEEEEEEECCCCCCHHH
KKQLAKPPNILITTPESLSLLLSNKGSNNLFKELSSIIIDEWHELMGSKRGNQCELSLSW
HHHHCCCCCEEEECCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHH
LRGNIKNLQIWAMSATIGNIEEAARAIVGMSAIKPKIISTNIQKEIEIISVLPEEETTFP
HCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHCCCCHHHHEEHEEECCCCCCCCC
WSGHLGIRSHSSLLKILDKNKSTLLFTNTRNQSERWYQCLKFFLPEMEDKIALHHGSLDK
CCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHEEECCCCCH
EDRKKVEEGVKDGLIKWVVCTSSLDLGVDFQPVDQIVQIGSAKNLARLIQRAGRSAHRPG
HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCC
GKSKIIFMPTNSLELFEISAMRRIIKSGISEEIRLPELSYDVLLQHLISLACGNGFDPKI
CCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCH
EKERIKSCWSYRNLKDQDWDWCLDFLEYGGKCLKAYPKYKKIIKEESQNNNVNFKYFVKD
HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
KSLIRMHKFNIGTITSDKFVNVKYMKGKSLGNLEENFASKLNPGDTFYFAGKMLQFVRIR
CCEEEEEECCCCEECCCCEEEEEEECCCCCCCHHHHHHHCCCCCCEEHHHHHHHHHHHHH
DMILYVKKSTKKSSLIPAWVGGQMAISDLLCESLRKEIDICNEPENYDCSNPELNSLRPI
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
LKKQKVLSNIPKKDEFLIEIYKTKDLSTIFVFTLDGKFVNEGIAFLWALRLAKLKQSTFS
HHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHEE
ITANDFGFSLTSSEDYDFSIIKKEADYFFDNKKLEEDLENAINFSELTKRRFKHIAQISG
EEECCCCEEECCCCCCCEEEEEHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LVNQNNPTKTKTSSQLQISSSLFYDVFTKYEEGHLLIKQSHQEVKEYQLENKRISRSLER
HHCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
LKNLKMLLNEIKTPTPFAFPLLVERLKNTLSNEPIERRVEKLIKKYSD
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNNIKQNSRQSNSISKIKQFFFSNGWEPLTYQEESWKAFLNGENGLIQVPTGCGKTYASL
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHEEECCCCCEEECCCCCCHHHHHH
MGPLSQLEDPKNNKSVQILLITPLKALSRDLKNSVQLAALHFNKEITVEIRNGDTTPYEK
HCCHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHEEEEEEECCEEEEEEECCCCCCHHH
KKQLAKPPNILITTPESLSLLLSNKGSNNLFKELSSIIIDEWHELMGSKRGNQCELSLSW
HHHHCCCCCEEEECCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHH
LRGNIKNLQIWAMSATIGNIEEAARAIVGMSAIKPKIISTNIQKEIEIISVLPEEETTFP
HCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHCCCCHHHHEEHEEECCCCCCCCC
WSGHLGIRSHSSLLKILDKNKSTLLFTNTRNQSERWYQCLKFFLPEMEDKIALHHGSLDK
CCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHEEECCCCCH
EDRKKVEEGVKDGLIKWVVCTSSLDLGVDFQPVDQIVQIGSAKNLARLIQRAGRSAHRPG
HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCC
GKSKIIFMPTNSLELFEISAMRRIIKSGISEEIRLPELSYDVLLQHLISLACGNGFDPKI
CCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCH
EKERIKSCWSYRNLKDQDWDWCLDFLEYGGKCLKAYPKYKKIIKEESQNNNVNFKYFVKD
HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
KSLIRMHKFNIGTITSDKFVNVKYMKGKSLGNLEENFASKLNPGDTFYFAGKMLQFVRIR
CCEEEEEECCCCEECCCCEEEEEEECCCCCCCHHHHHHHCCCCCCEEHHHHHHHHHHHHH
DMILYVKKSTKKSSLIPAWVGGQMAISDLLCESLRKEIDICNEPENYDCSNPELNSLRPI
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
LKKQKVLSNIPKKDEFLIEIYKTKDLSTIFVFTLDGKFVNEGIAFLWALRLAKLKQSTFS
HHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHEE
ITANDFGFSLTSSEDYDFSIIKKEADYFFDNKKLEEDLENAINFSELTKRRFKHIAQISG
EEECCCCEEECCCCCCCEEEEEHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LVNQNNPTKTKTSSQLQISSSLFYDVFTKYEEGHLLIKQSHQEVKEYQLENKRISRSLER
HHCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
LKNLKMLLNEIKTPTPFAFPLLVERLKNTLSNEPIERRVEKLIKKYSD
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on acid anhydrides [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]