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The map label for this gene is ycaC [C]

Identifier: 78779021

GI number: 78779021

Start: 599778

End: 600344

Strand: Reverse

Name: ycaC [C]

Synonym: PMT9312_0636

Alternate gene names: 78779021

Gene position: 600344-599778 (Counterclockwise)

Preceding gene: 78779023

Following gene: 78779020

Centisome position: 35.12

GC content: 28.04

Gene sequence:

>567_bases
ATGAATGATCAAGAAATCTCTTATGATAAATTATCATCGAAAGTAAACGCGTTGCTAATTATTGATATTCAGGGAAAAAT
AATAAGACCAATTTTTAATAAGAATTCAATAATCAAAAACATCAAAAAGCTTATAAATGCTTACCAAATTTTAGAAGAAA
ACATATTTGTATCTGAACAGAACCCACTCAAATTGGGTGTGACGATCCCTGAATTATTACCCAAAGTACGATTTAAAAAA
ATTGATAAAATGGATTTTAGCCTAGCAAACATACAAGAATTTTTACAAGAAATTGAAAATAAGAAAATTACAAATTTGAT
AGTTTGTGGTATCGAAACACATATTTGCATTCAGCAAACAGTCTTAGATTTTTTACAAAAAGGATTTGAAGTAGTTCTTA
TTTCTGATGCTATGGGCAGTCGAAATTGTATAGATCATGAAATAGCCTTACAAAGAATGACTCAAAAGGGGGCAGTCTTA
ACAACTACTGAATCAATAATCTTTGAATTATGCAAGACTGCTAATAGAAAAGAATTCAAAGAAATTAGAGATATAATATT
GAGTTAA

Upstream 100 bases:

>100_bases
CAATAATAACTCTAGATGAGAGTAAAACAACTTTTTGATTTAAAATGTTTACTAAAGTTCTTCAAAATATTATGTTAAAT
GTATCTTTTATATGTAAATT

Downstream 100 bases:

>100_bases
AAAACAATTTAGACTGGTTTGTTTTTTAGAGATAATTTAAACTTTAATTAGAGCAATATTTTTAGGTTTTAATTAAATAT
GAAATTAGCTACTGAAAATT

Product: isochorismatase hydrolase family protein

Products: NA

Alternate protein names: Isochorismatase Family Protein; Isochorismatase Hydrolase Family Protein; Isochorismatase Superfamily Hydrolase; Nicotinamidase-Like Amidase; Amidase; Isochorismatase Family Hydrolase; Isochorismatase Domain-Containing; Amidohydrolase; Hydrolase Isochorismatase; Amidase Related Nicotinamidase; YcaC Like Amidohydrolase; Isochorismatase Family; Nicotinamidase; YcaC-Related Amidohydrolase; Hydrolase; Isochorismatase Domain-Containing A; Isochorismatase Hydrolase Family; Hydrolase Isochorismatase Family; Nicotinamidase-Related Amidase

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MNDQEISYDKLSSKVNALLIIDIQGKIIRPIFNKNSIIKNIKKLINAYQILEENIFVSEQNPLKLGVTIPELLPKVRFKK
IDKMDFSLANIQEFLQEIENKKITNLIVCGIETHICIQQTVLDFLQKGFEVVLISDAMGSRNCIDHEIALQRMTQKGAVL
TTTESIIFELCKTANRKEFKEIRDIILS

Sequences:

>Translated_188_residues
MNDQEISYDKLSSKVNALLIIDIQGKIIRPIFNKNSIIKNIKKLINAYQILEENIFVSEQNPLKLGVTIPELLPKVRFKK
IDKMDFSLANIQEFLQEIENKKITNLIVCGIETHICIQQTVLDFLQKGFEVVLISDAMGSRNCIDHEIALQRMTQKGAVL
TTTESIIFELCKTANRKEFKEIRDIILS
>Mature_188_residues
MNDQEISYDKLSSKVNALLIIDIQGKIIRPIFNKNSIIKNIKKLINAYQILEENIFVSEQNPLKLGVTIPELLPKVRFKK
IDKMDFSLANIQEFLQEIENKKITNLIVCGIETHICIQQTVLDFLQKGFEVVLISDAMGSRNCIDHEIALQRMTQKGAVL
TTTESIIFELCKTANRKEFKEIRDIILS

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI209969695, Length=187, Percent_Identity=31.5508021390374, Blast_Score=102, Evalue=2e-22,
Organism=Homo sapiens, GI103471987, Length=191, Percent_Identity=29.8429319371728, Blast_Score=99, Evalue=2e-21,
Organism=Homo sapiens, GI13376007, Length=203, Percent_Identity=29.5566502463054, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17540156, Length=187, Percent_Identity=35.2941176470588, Blast_Score=105, Evalue=1e-23,
Organism=Drosophila melanogaster, GI19922924, Length=182, Percent_Identity=34.0659340659341, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI21357489, Length=171, Percent_Identity=32.7485380116959, Blast_Score=98, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21565; Mature: 21565

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDQEISYDKLSSKVNALLIIDIQGKIIRPIFNKNSIIKNIKKLINAYQILEENIFVSEQ
CCCCCCCHHHHHCCCCEEEEEEECCCEEHHHHCCHHHHHHHHHHHHHHHHHHHHCEECCC
NPLKLGVTIPELLPKVRFKKIDKMDFSLANIQEFLQEIENKKITNLIVCGIETHICIQQT
CCEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHEEEECCHHHHHHHHH
VLDFLQKGFEVVLISDAMGSRNCIDHEIALQRMTQKGAVLTTTESIIFELCKTANRKEFK
HHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCHHHHH
EIRDIILS
HHHHHHCC
>Mature Secondary Structure
MNDQEISYDKLSSKVNALLIIDIQGKIIRPIFNKNSIIKNIKKLINAYQILEENIFVSEQ
CCCCCCCHHHHHCCCCEEEEEEECCCEEHHHHCCHHHHHHHHHHHHHHHHHHHHCEECCC
NPLKLGVTIPELLPKVRFKKIDKMDFSLANIQEFLQEIENKKITNLIVCGIETHICIQQT
CCEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHEEEECCHHHHHHHHH
VLDFLQKGFEVVLISDAMGSRNCIDHEIALQRMTQKGAVLTTTESIIFELCKTANRKEFK
HHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCHHHHH
EIRDIILS
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA