Click here to switch to the map view.

The map label for this gene is 78778888

Identifier: 78778888

GI number: 78778888

Start: 471394

End: 471819

Strand: Reverse

Name: 78778888

Synonym: PMT9312_0503

Alternate gene names: NA

Gene position: 471819-471394 (Counterclockwise)

Preceding gene: 78778891

Following gene: 78778886

Centisome position: 27.6

GC content: 34.27

Gene sequence:

>426_bases
ATGAATCATTGTTTAATTCAAGCGGTAATTAATAGCGCTCCCCAAATGAGGTATACGCAAGAGAACCAGACTCCAATTGC
AGAAATGATTGTTAATTTTAAAGGATTACGTAGTGAAGATCCAGCTAGAGAACTCAAGATTTTAGGTTGGGGAAATATTG
CTCAAGAAATGATAGAAGAACTAAAAGAGGGGCAAAATATAGTTATTGAAGGACGTCTTAGAATGAATTCAGTTACTAGA
AAAGATGGAACTAAAGAAAAGCAACCAGAACTAACAGCTTCAAAGATTCATAAAATAACGCCAGTTGACATTATTAAAAC
TGATCAAGAAGAAAATAATGGATCATTTGATAAGAAAGAAAACGCCAAGAATTCTAGTTGGGATAGCTCACCTTTAGTGC
CGCAAGTTGACGAAATACCTTTTTAA

Upstream 100 bases:

>100_bases
GCCATTACAGGTCCATCAGAAGTTCCTGATAGGATCCAAACATTTTCGTAGCAATTTTCTTGATTCTGCATCAGTATGTC
TTTAATTAAATAGTAAAGTA

Downstream 100 bases:

>100_bases
ATCAAATATCAACATTATTTTCTTGAACACTTATAATTAATTTGCTTATTTTTCTTTCAAGAGAAGCAAGTTCGCTTCTA
ATTTCTGGCCATTTACCCTT

Product: hypothetical protein

Products: NA

Alternate protein names: Thylakoid-associated SSB [H]

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MNHCLIQAVINSAPQMRYTQENQTPIAEMIVNFKGLRSEDPARELKILGWGNIAQEMIEELKEGQNIVIEGRLRMNSVTR
KDGTKEKQPELTASKIHKITPVDIIKTDQEENNGSFDKKENAKNSSWDSSPLVPQVDEIPF

Sequences:

>Translated_141_residues
MNHCLIQAVINSAPQMRYTQENQTPIAEMIVNFKGLRSEDPARELKILGWGNIAQEMIEELKEGQNIVIEGRLRMNSVTR
KDGTKEKQPELTASKIHKITPVDIIKTDQEENNGSFDKKENAKNSSWDSSPLVPQVDEIPF
>Mature_141_residues
MNHCLIQAVINSAPQMRYTQENQTPIAEMIVNFKGLRSEDPARELKILGWGNIAQEMIEELKEGQNIVIEGRLRMNSVTR
KDGTKEKQPELTASKIHKITPVDIIKTDQEENNGSFDKKENAKNSSWDSSPLVPQVDEIPF

Specific function: Unknown

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 16003; Mature: 16003

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHCLIQAVINSAPQMRYTQENQTPIAEMIVNFKGLRSEDPARELKILGWGNIAQEMIEE
CCHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHCCCCCCCCCHHEEEEECCHHHHHHHHH
LKEGQNIVIEGRLRMNSVTRKDGTKEKQPELTASKIHKITPVDIIKTDQEENNGSFDKKE
HHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCC
NAKNSSWDSSPLVPQVDEIPF
CCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNHCLIQAVINSAPQMRYTQENQTPIAEMIVNFKGLRSEDPARELKILGWGNIAQEMIEE
CCHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHCCCCCCCCCHHEEEEECCHHHHHHHHH
LKEGQNIVIEGRLRMNSVTRKDGTKEKQPELTASKIHKITPVDIIKTDQEENNGSFDKKE
HHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCC
NAKNSSWDSSPLVPQVDEIPF
CCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]