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The map label for this gene is petA [H]

Identifier: 78778846

GI number: 78778846

Start: 435592

End: 436545

Strand: Reverse

Name: petA [H]

Synonym: PMT9312_0461

Alternate gene names: 78778846

Gene position: 436545-435592 (Counterclockwise)

Preceding gene: 78778847

Following gene: 78778845

Centisome position: 25.54

GC content: 37.32

Gene sequence:

>954_bases
ATGAAAGATCTTAAAAATCAAATCATGAGAAAAACAACTTTATTCATCTTCAGTCTGCTATTCATTTCGAGCATTCTATT
TTATCCTAAGACCACTTTTGCTTATCCATTTTGGGCTCAGCAAAACTACGAATCCCCAAGAGAAGCTACAGGAAAGATAG
TCTGTGCAAATTGTCATTTAGCCCAAATGCCTACTATTGCAGAGGTTCCGCAATCTGTTGGTGCTGATAGTGTTTTTAAA
GCTGTTGTCAAAATACCTTACAAAAATGACTTGAAAGAGATCGGAGCTGATGGTTCTGAAGTTCCATTACAAGTTGGAGC
TGTTGTAATGCTGCCTGATGGCTTTAAACTTGCTCCACAAGAAAGGTGGACCGAAGAAATCAAAGAGGAAACGGAAGGGG
TTTATTTTACTAATTACAGTGAAGAGAAAGATAATATCATCATCGTTGGTCCTTTGCCTGGCGATACCAATAAAGAAATA
GTTTTTCCTGTACTTTCCCCTGATCCATCCACTAATAAAGAATATCACTATGGGAAATACTCGTTACATATCGGAGGCAA
TAGAGGTAGAGGTCAAGTATACCCAACTGGAGACAAAAGCAATAATGTAGTTTTCACCTCTTCCACCTCAGGAACTATTA
ATTCAATAGATACAATTGAAGATGGTAGCTATAAGGTCAATATAGAAAACGAGAATGGTGAAATAACTACTGAAGCAGTC
CCTGTTGGTCCTCAACTTATCGTAAAAGCACAAGACAAAATCAATGCAGGTGATCCACTTACTAATGATCCCAATGTTGG
CGGCTTTGGGCAATTAGATGCTGAAGTTGTACTACAAAGCCCTTACAGAGTAATTGGATTAATTGCATTCTTTATTGGTG
TAGGTTTAACACAAATACTTTTAGTATTAAAGAAAAAACAAGTAGAAAAAGTGCAGGCAGCAGAGGGTATTTAA

Upstream 100 bases:

>100_bases
AGCACTGGCTCATGTAGATATTGAAGATGATGCCGTACTTGTCAAACAATGGTCAGAAACTGACTTTAGAACTAATGAAA
ATCCTTGGTGGGCATAAAAA

Downstream 100 bases:

>100_bases
CTTTCTTTCTCAATGCTTATATTTCAAGCTTTTATACAATCTCCAGGTGAAACATTTTTAAATTTAGGATTTCTTACAAT
TCGATGGTATGGATTTCTGA

Product: apocytochrome f

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MKDLKNQIMRKTTLFIFSLLFISSILFYPKTTFAYPFWAQQNYESPREATGKIVCANCHLAQMPTIAEVPQSVGADSVFK
AVVKIPYKNDLKEIGADGSEVPLQVGAVVMLPDGFKLAPQERWTEEIKEETEGVYFTNYSEEKDNIIIVGPLPGDTNKEI
VFPVLSPDPSTNKEYHYGKYSLHIGGNRGRGQVYPTGDKSNNVVFTSSTSGTINSIDTIEDGSYKVNIENENGEITTEAV
PVGPQLIVKAQDKINAGDPLTNDPNVGGFGQLDAEVVLQSPYRVIGLIAFFIGVGLTQILLVLKKKQVEKVQAAEGI

Sequences:

>Translated_317_residues
MKDLKNQIMRKTTLFIFSLLFISSILFYPKTTFAYPFWAQQNYESPREATGKIVCANCHLAQMPTIAEVPQSVGADSVFK
AVVKIPYKNDLKEIGADGSEVPLQVGAVVMLPDGFKLAPQERWTEEIKEETEGVYFTNYSEEKDNIIIVGPLPGDTNKEI
VFPVLSPDPSTNKEYHYGKYSLHIGGNRGRGQVYPTGDKSNNVVFTSSTSGTINSIDTIEDGSYKVNIENENGEITTEAV
PVGPQLIVKAQDKINAGDPLTNDPNVGGFGQLDAEVVLQSPYRVIGLIAFFIGVGLTQILLVLKKKQVEKVQAAEGI
>Mature_317_residues
MKDLKNQIMRKTTLFIFSLLFISSILFYPKTTFAYPFWAQQNYESPREATGKIVCANCHLAQMPTIAEVPQSVGADSVFK
AVVKIPYKNDLKEIGADGSEVPLQVGAVVMLPDGFKLAPQERWTEEIKEETEGVYFTNYSEEKDNIIIVGPLPGDTNKEI
VFPVLSPDPSTNKEYHYGKYSLHIGGNRGRGQVYPTGDKSNNVVFTSSTSGTINSIDTIEDGSYKVNIENENGEITTEAV
PVGPQLIVKAQDKINAGDPLTNDPNVGGFGQLDAEVVLQSPYRVIGLIAFFIGVGLTQILLVLKKKQVEKVQAAEGI

Specific function: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Single-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome f family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002325
- InterPro:   IPR011054 [H]

Pfam domain/function: PF01333 Apocytochr_F_C [H]

EC number: NA

Molecular weight: Translated: 34767; Mature: 34767

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS51010 CYTF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDLKNQIMRKTTLFIFSLLFISSILFYPKTTFAYPFWAQQNYESPREATGKIVCANCHL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHCCCCEEEECCCH
AQMPTIAEVPQSVGADSVFKAVVKIPYKNDLKEIGADGSEVPLQVGAVVMLPDGFKLAPQ
HHCCCHHHHHHHCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEECEEEECCCCCEECCH
ERWTEEIKEETEGVYFTNYSEEKDNIIIVGPLPGDTNKEIVFPVLSPDPSTNKEYHYGKY
HHHHHHHHHHHCCEEEECCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEECCEE
SLHIGGNRGRGQVYPTGDKSNNVVFTSSTSGTINSIDTIEDGSYKVNIENENGEITTEAV
EEEECCCCCCCCEEECCCCCCCEEEECCCCCCCCCCCEECCCCEEEEEECCCCEEEEEEE
PVGPQLIVKAQDKINAGDPLTNDPNVGGFGQLDAEVVLQSPYRVIGLIAFFIGVGLTQIL
CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHEECCCHHHHHHHHHHHHHHHHHHH
LVLKKKQVEKVQAAEGI
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKDLKNQIMRKTTLFIFSLLFISSILFYPKTTFAYPFWAQQNYESPREATGKIVCANCHL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHCCCCEEEECCCH
AQMPTIAEVPQSVGADSVFKAVVKIPYKNDLKEIGADGSEVPLQVGAVVMLPDGFKLAPQ
HHCCCHHHHHHHCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEECEEEECCCCCEECCH
ERWTEEIKEETEGVYFTNYSEEKDNIIIVGPLPGDTNKEIVFPVLSPDPSTNKEYHYGKY
HHHHHHHHHHHCCEEEECCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCEECCEE
SLHIGGNRGRGQVYPTGDKSNNVVFTSSTSGTINSIDTIEDGSYKVNIENENGEITTEAV
EEEECCCCCCCCEEECCCCCCCEEEECCCCCCCCCCCEECCCCEEEEEECCCCEEEEEEE
PVGPQLIVKAQDKINAGDPLTNDPNVGGFGQLDAEVVLQSPYRVIGLIAFFIGVGLTQIL
CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHEECCCHHHHHHHHHHHHHHHHHHH
LVLKKKQVEKVQAAEGI
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA